7zip (22.01+dfsg-5) unstable; urgency=medium . * Enable link time optimization (LTO) * Manually de-reference pointers acl (2.3.1-2) unstable; urgency=medium . * Switch to Standards-Version 4.6.1 (no changes needed). * Override lintian false positive for hardening-no-fortify-functions hint. * Reduce code comments in patches/build-cross-gettext-musl.patch to the minimal understandable text. * Mark getfacl-fix-uninitialized-variable.patch as submitted upstream. apache2 (2.4.54-5) unstable; urgency=medium . [ Hendrik Jäger ] * fix: one oom-killed thread should not take down the whole service * fix: remove modelines * fix: update clickjacking protection example * fix: use tab for indentation, even in commented examples . [ Yadd ] * Revert "Fix: confusing and impractical naming" (unbreak squid and haproxy tests) apache2 (2.4.54-4) unstable; urgency=medium . [ Charles Plessy ] * Replace mime-support transition package with media-types (Closes: #980275) . [ Hendrik Jäger ] * fix mislead safety precautions: don't hide errors when enabling a module. MR !20 * fix trailing spaces and indentation inconsistencies. MR !19 !21 !22 * Fix confusing and impractical naming: rename default-ssl.conf into 000-default-ssl.conf. MR !23 * Fix confusing keyword: replace _default_ by *. MR !24 apertium-regtest (0.9.1-3) unstable; urgency=low . [ Debian Janitor ] * Apply hints suggested by the multi-arch hinter. . [ Kartik Mistry ] * Updated Standards-Version to 4.6.1 * Updated debian/watch. astrometry.net (0.92+dfsg-1) unstable; urgency=medium . * New upstream version 0.92+dfsg * Rediff patches bibledit-cloud (5.0.992-3) unstable; urgency=medium . * Vcs-Git: fix lintian warning bibledit-cloud (5.0.992-2) unstable; urgency=medium . * d/control: Fix vcs-git bibledit-cloud (5.0.992-1) unstable; urgency=medium . * Move quill sources to d/missing-sources * New upstream version 5.0.992 bibledit-cloud (5.0.990-3) unstable; urgency=medium . * d/control: Fix VCS URL bibledit-cloud (5.0.990-2) unstable; urgency=medium . * d/control: New repo URL * closes: #975407 bluedevil (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). breeze (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). breeze-grub (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). breeze-gtk (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). breeze-plymouth (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). budgie-desktop (10.6.4+git20220830-4) unstable; urgency=medium . * Bug-fix - Ensure last keyboard layout used is the keyboard layout chosen on logon Add-a-small-delay-to-ensure-keyboard-layout-defaults.patch (LP: #1998214) * Packaging Changes - d/control budgie:update dependencies and suggestions for underlying required packages used in the source together with suggested packages to enhance the experience - d/control apply multiarch hint to budgie-desktop-doc - d/watch(.nopgp) update to resolve github release URL changes chargebee-python (1.6.6-4) unstable; urgency=medium . * Team upload. * d/rules: force tests to run via something other than the deprecated "python3 setup.py test" command. clustershell (1.9-1) unstable; urgency=medium . * New upstream release 1.9 * Remove unnecessary README.debian file about vim-addon * Update copyright years * Update debian policy version to 4.6.1.1 * Remove empty files from the debian dir * Remove get-orig-tarball target * Remove python3-yaml recommended from clustershell package * Remove python3-pkg-resources from python3-clustershell dependency * Define import_name for autopkgtest * Remove empty /etc folder in python3-clustershell cnvkit (0.9.9-2) unstable; urgency=medium . * Team Upload. * Re-diff patches (refresh) * d/rules: do not run tests in parallel cnvkit (0.9.9-1) unstable; urgency=medium . * Fix watchfile to detect new versions on github (routine-update) * New upstream version * Standards-Version: 4.6.0 (routine-update) * watch file standard 4 (routine-update) cnvkit (0.9.8-1) unstable; urgency=medium . [ Steffen Moeller ] * Added symbolic link from /usr/lib/debian-med/bin/cnvkit.py to /usr/bin/cnvkit.py . bcbio explicitly looks in /usr/bin, though. . [ Michael R. Crusoe ] * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * debian/control: mips64el is not supported by upstream, remove it Closes: #962743 cnvkit (0.9.7-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Refreshed the patches * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. cnvkit (0.9.6-3) unstable; urgency=medium . * Don't run the autopkgtests in parallel. cnvkit (0.9.6-2) unstable; urgency=medium . * Support more architectures (Closes: #942582) * Tests pass with the latest python3-pandas. (Closes: #944041) cnvkit (0.9.6-1) unstable; urgency=medium . * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 cnvkit (0.9.5-3) unstable; urgency=medium . * Fix buster rebuilds (Closes: #925568) d/patches/controldir.patch cnvkit (0.9.5-2) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Michael R. Crusoe ] * Remove trailing whitespace in debian/rules * Standards-Version: 4.3.0 * Run the included tests as autopkgtests. * Mark cnv_expression_correlate as a script * amd64 only, due to the realities of where python-pysam is available. cnvkit (0.9.5-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 11 * Standards-Version: 4.2.0 cnvkit (0.9.3-2) unstable; urgency=medium . * Add missing build-dep on python3-future. (Closes: #901877) * debian/rules: fix override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS cnvkit (0.9.3-1) unstable; urgency=medium . * New upstream version. * Initial release. (Closes: #828176) * Policy 4.1.4 compliance * Moved to python3 * Cleaning test tmp results color-theme-modern (0.0.3-3) unstable; urgency=medium . * Update my email address and copyright years. * Drop version qualifier for Recommends: emacs, because even oldoldstable (stretch) has the required version. * Declare Standards-Version: 4.5.1 (no changes required). commonmark-bkrs (0.5.4+ds-7) unstable; urgency=medium . * Debianization: - d/watch, update; - d/rules, harden; - d/control: - Standards-Version, bump to version 4.6.1 (no change); - d/s/lintian-overrides, update; - d/copyright: - Copyright year-tuples, update; - d/s/lintian-overrides, update. consfigurator (1.2.0-1) unstable; urgency=medium . * New upstream release. cool-retro-term (1.2.0+ds2-1) unstable; urgency=medium . * d/control: - drop binary pkg qml-module-qmltermwidget. (Closes: #1022953) - update dependencies to qml-module-termwidget. * d/qml-module-qmltermwidget.install: removed. * Bump standards version to 4.6.1. * d/copyright: drop qmltermwidget parts. crash (8.0.2-1) unstable; urgency=medium . * New upstream * commit f1cd581d1c4afa5b8ffdfaa6a3ea9f545fe4ec91 * Author: Kazuhito Hagio * Date: Wed Nov 16 13:13:39 2022 +0900 * * crash-8.0.1 -> crash-8.0.2 * * Signed-off-by: Kazuhito Hagio * * commit a158590f475c8d6d504b0c5e28b3cd91cfd47877 * Author: Lianbo Jiang * Date: Wed Nov 9 14:21:57 2022 +0800 * * Fix for "ps/vm" commands to display correct %MEM and RSS values * * The ps/vm commands may print the bogus value of the %MEM and RSS, the * reason is that the counter of rss stat is updated in asynchronous manner * and may become negative, when the SPLIT_RSS_COUNTING is enabled in * kernel. * * As a result, crash will read it from memory and convert from negative to * unsigned long integer, eventually it overflows and gets a big integer. * For example: * * crash> ps 1393 * PID PPID CPU TASK ST %MEM VSZ RSS COMM * 1393 1 24 ffff9584bb542100 RU 541298032135.9 4132 18014398509481908 enlinuxpc64 * ^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^ * * This is unexpected, crash needs to correct its value for this case. * * Signed-off-by: Lianbo Jiang * * commit 21139d9456ee41ffc8cec804dc530d6934ddac89 * Author: Matias Ezequiel Vara Larsen * Date: Mon Oct 24 11:35:29 2022 +0200 * * Fix segmentation fault in page_flags_init_from_pageflag_names() * * When read_string() fails in page_flags_init_from_pageflag_names(), * error() dereferences the name variable to print the string that the * variable points to. However, name points to a string that is not in * crash's memory-space thus triggering a segmentation fault. * * This patch replaces "%s" in the error message with "%lx" so the address * is printed instead. Also replaces "%ld" for mask with "%lx". * * [ kh: changed the conversion specifiers and commit message ] * * Signed-off-by: Matias Ezequiel Vara Larsen * Signed-off-by: Kazuhito Hagio * * commit 487551488b15fcd135b29990593699a121730219 * Author: Lianbo Jiang * Date: Tue Oct 4 18:57:11 2022 +0800 * * ppc64: still allow oneto move on if the emergency stacks info fails to * initialize * * Currently crash will fail and then exit, if the initialization of * the emergency stacks information fails. In real customer environments, * sometimes, a vmcore may be partially damaged, although such vmcores * are rare. For example: * * # ./crash ../3.10.0-1127.18.2.el7.ppc64le/vmcore * ../3.10.0-1127.18.2.el7.ppc64le/vmlinux -s * crash: invalid kernel virtual address: 38 type: * "paca->emergency_sp" * # * * Lets try to keep loading vmcore if such issues happen, so call * the readmem() with the RETURN_ON_ERROR instead of FAULT_ON_ERROR, * which allows the crash move on. * * Reported-by: Dave Wysochanski * Signed-off-by: Lianbo Jiang * * commit 3b5e3e1583a1f596360c04e8a322e30cf88f27ab * Author: Tao Liu * Date: Mon Sep 19 17:49:23 2022 +0800 * * Let "kmem" print task context with physical address * * Patch [1] enables "kmem" to print task context if the given virtual * address is a vmalloced stack. * * This patch lets "kmem" print task context also when the given address * is a physical address. * * Before: * crash> kmem 1883700e28 * VMAP_AREA VM_STRUCT ADDRESS RANGE SIZE * ffff94eb9102c640 ffff94eb9102b140 ffffb7efce9b8000 - ffffb7efce9bd000 20480 * * PAGE PHYSICAL MAPPING INDEX CNT FLAGS * ffffdd28220dc000 1883700000 0 0 1 50000000000000 * * After: * crash> kmem 1883700e28 * PID: 847 * COMMAND: "khungtaskd" * TASK: ffff94f8038f4000 [THREAD_INFO: ffff94f8038f4000] * CPU: 72 * STATE: TASK_RUNNING (PANIC) * * VMAP_AREA VM_STRUCT ADDRESS RANGE SIZE * ffff94eb9102c640 ffff94eb9102b140 ffffb7efce9b8000 - ffffb7efce9bd000 20480 * * PAGE PHYSICAL MAPPING INDEX CNT FLAGS * ffffdd28220dc000 1883700000 0 0 1 50000000000000 * * [1]: https://listman.redhat.com/archives/crash-utility/2022-September/010115.html * * [ kh: squashed the 4/4 patch into 3/4 ] * * Signed-off-by: Tao Liu * Signed-off-by: Kazuhito Hagio * * commit 60cb8650a0126abda661c44d198ebde514eca3e2 * Author: Tao Liu * Date: Mon Sep 19 17:49:22 2022 +0800 * * Fix page offset issue when converting physical to virtual address * * When trying to convert a physical address to its virtual * address in dump_vmap_area() and dump_vmlist(), the vi->retval * is added by 2 values: the page aligned address "pcheck" * and page offset address "PAGEOFFSET(paddr)". * * However "paddr" is given by "pcheck", is also page aligned, * so "PAGEOFFSET(paddr)" is always 0. * * In this patch, we will use PAGEOFFSET(vi->spec_addr) to give the * page offset, vi->spec_addr is the physical address we'd like * to convert, which contains the correct page offset. * * Signed-off-by: Tao Liu * * commit ad1397a73594d65aaad9d0b9a94a1dd75d8c61dd * Author: Tao Liu * Date: Mon Sep 19 17:49:21 2022 +0800 * * Fix "kmem" failing to print task context when address is vmalloced stack * * When kernel enabled CONFIG_VMAP_STACK, stack can be allocated to * vmalloced area. Currently crash didn't handle the case, as a result, * "kmem" will not print the task context as expected. This patch fix the * bug by checking if the address is a vmalloced stack first. * * Before: * crash> kmem ffffb7efce9bbe28 * VMAP_AREA VM_STRUCT ADDRESS RANGE SIZE * ffff94eb9102c640 ffff94eb9102b140 ffffb7efce9b8000 - ffffb7efce9bd000 20480 * * PAGE PHYSICAL MAPPING INDEX CNT FLAGS * ffffdd28220dc000 1883700000 0 0 1 50000000000000 * * After: * crash> kmem ffffb7efce9bbe28 * PID: 847 * COMMAND: "khungtaskd" * TASK: ffff94f8038f4000 [THREAD_INFO: ffff94f8038f4000] * CPU: 72 * STATE: TASK_RUNNING (PANIC) * * VMAP_AREA VM_STRUCT ADDRESS RANGE SIZE * ffff94eb9102c640 ffff94eb9102b140 ffffb7efce9b8000 - ffffb7efce9bd000 20480 * * PAGE PHYSICAL MAPPING INDEX CNT FLAGS * ffffdd28220dc000 1883700000 0 0 1 50000000000000 * * Signed-off-by: Tao Liu * * commit 4ea3a806d11f000f2eb1ddc72c2b7a543e319f64 * Author: Lianbo Jiang * Date: Fri Sep 16 14:00:01 2022 +0800 * * Fix for the invalid linux_banner pointer issue * * Currently, crash may fail with the following error: * * # ./crash -s vmlinux vmcore * WARNING: invalid linux_banner pointer: 65762078756e694c * crash: vmlinux and vmcore do not match! * * The reason is that the type of the symbol in the data segment may be * defined as 'D' or 'd'. The crash only handled the type 'D', but it * didn't deal with the type 'd'. For example: * * # nm vmlinux | grep linux_banner * ffffffff827cfa80 d linux_banner * * It has been observed that a vmlinux compiled by clang has this type. * Let's add the type 'd' recognition to solve such issue. * * Signed-off-by: Lianbo Jiang * * commit bdbf5887d6259ea3108d4fa674f3794adad54d52 * Author: Kazuhito Hagio * Date: Thu Sep 1 13:42:28 2022 +0900 * * Fix gcc-11 compiler warnings on gdb-10.2/gdb/symtab.c * * Without the patch, the following gcc-11 compiler warnings are emitted * for gdb-10.2/gdb/symtab.c: * * symtab.c: In function 'void gdb_get_datatype(gnu_request*)': * symtab.c:7131:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] * 7131 | register struct type *type; * | ^~~~ * symtab.c:7132:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] * 7132 | register struct type *typedef_type; * | ^~~~~~~~~~~~ * ... * * Usually we don't fix compiler warnings for gdb, but these are emitted * even by "make clean ; make warn", which doesn't recompile the whole * gdb, so it would be better to fix. * * Signed-off-by: Kazuhito Hagio * * commit 51acac75cdb20caab30a85ebfec5906efe034477 * Author: Kazuhito Hagio * Date: Thu Sep 1 14:03:09 2022 +0900 * * Fix gcc-12 compiler warnings on lkcd_*.c * * Without the patch, the following gcc-12 compiler warnings are emitted * for lkcd_*.c: * * lkcd_v1.c: In function 'dump_lkcd_environment_v1': * lkcd_v1.c:252:20: warning: the comparison will always evaluate as 'true' for the address of 'dh_panic_string' will never be NULL [-Waddress] * 252 | dh && dh->dh_panic_string && * | ^~ * In file included from lkcd_v1.c:21: * lkcd_vmdump_v1.h:108:30: note: 'dh_panic_string' declared here * 108 | char dh_panic_string[DUMP_PANIC_LEN]; * | ^~~~~~~~~~~~~~~ * ... * * Reported-by: Lianbo Jiang * Signed-off-by: Kazuhito Hagio * * commit 5b9d3e98cda9d99f3277aabec30d076e62cc5e71 * Author: Chunguang.Xu * Date: Thu Aug 25 12:07:20 2022 +0800 * * Add debian/ubuntu vmlinux location to default search dirs * * Now crash cannot find debian/ubuntu kernel vmlinux, we need to * explicitly specify the path to vmlinux. Try to add the debian * vmlinux location to default search directories. * * Signed-off-by: Chunguang Xu * * commit 3ed9ec5c8d09cffac9772abbf54214125ade9127 * Author: Tao Liu * Date: Wed Aug 31 11:54:15 2022 +0800 * * x86_64: Correct the identifier when locating the call instruction * * The previous implementation to locate the call instruction is * to strstr "call", then check whether the previous char is ' ' * or '\t'. The implementation is problematic. For example it * cannot resolve the following disassembly string: * * "0xffffffffc0995378 :\tcall 0xffffffff8ecfa4c0 \n" * * strstr will locate the "_call" and char check fails, * as a result, extract_hex fails to get the calling address. * * NOTE: the issue is more likely to be reproduced when patch[1] applied. * Because without patch[1], the disassembly string will be as follows, * so the issue is no longer reproducible. * * "0xffffffffc0995378:\tcall 0xffffffff8ecfa4c0 \n" * * Before the patch: * crash> bt 1472 * PID: 1472 TASK: ffff8c121fa72f70 CPU: 18 COMMAND: "nfsv4.1-svc" * #0 [ffff8c16231a3db8] __schedule at ffffffff8ecf9ef3 * #1 [ffff8c16231a3e40] schedule at ffffffff8ecfa4e9 * * After the patch: * crash> bt 1472 * PID: 1472 TASK: ffff8c121fa72f70 CPU: 18 COMMAND: "nfsv4.1-svc" * #0 [ffff8c16231a3db8] __schedule at ffffffff8ecf9ef3 * #1 [ffff8c16231a3e40] schedule at ffffffff8ecfa4e9 * #2 [ffff8c16231a3e50] nfs41_callback_svc at ffffffffc099537d [nfsv4] * #3 [ffff8c16231a3ec8] kthread at ffffffff8e6b966f * #4 [ffff8c16231a3f50] ret_from_fork at ffffffff8ed07898 * * This patch fix the issue by strstr "\tcall" and " call", to * locate the correct call instruction. * * [1]: https://listman.redhat.com/archives/crash-utility/2022-August/010085.html * * Signed-off-by: Tao Liu * * commit 2145b2bb79c59aa25c5155a8f9851554d1813fb9 * Author: Tao Liu * Date: Wed Aug 31 11:54:13 2022 +0800 * * Let gdb get kernel module symbols info from crash * * Gdb will try to resolve an address to its corresponding symbol name * such as when printing a structure. It works fine for kernel symbols, * because gdb can find them through vmlinux. However as for kernel * modules symbols, crash resolves them by dig into "struct module", * which gdb don't know. As a result, gdb fails to translate a kernel * module address to its symbol name without "mod -s|-S" options. For * example we can reproduce the issue as follows. * * crash> timer * .... * 4331308176 336 ffff94ea24240860 ffffffffc03762c0 * .... * crash> sym 0xffffffffc03762c0 * ffffffffc03762c0 (t) estimation_timer [ip_vs] * * Before patch: * crash> timer_list ffff94ea24240860 * struct timer_list { * .... * function = 0xffffffffc03762c0, * .... * } * * After patch: * crash> timer_list ffff94ea24240860 * struct timer_list { * .... * function = 0xffffffffc03762c0 , * .... * } * * In this patch, we add an interface for gdb, when gdb trying to build * kernel module's address symbolic, the info can be get from crash. * * Signed-off-by: Tao Liu * * commit 9cbfea67eb4f094d47cd841b73ddbbdbe6b58696 * Author: Tao Liu * Date: Thu Aug 25 14:39:44 2022 +0800 * * Fix "task -R" by adding end identifier for union in task_struct * * Previously, the start and end identifiers for union are " {\n" and * " }, \n". However the end identifier is not always as expected. * " },\n" can also be the end identifier with gdb-10.2. As a result, * variable "randomized" is in incorrect state after union, and fails to * identify the later struct members. For example, we can reproduce the * issue as follows: * * crash> task * PID: 847 TASK: ffff94f8038f4000 CPU: 72 COMMAND: "khungtaskd" * struct task_struct { * thread_info = { * flags = 2148024320, * status = 0, * preempt_lazy_count = 0 * }, * { * * }, * ... * wake_entry = { * next = 0x0 * }, * ... * * Before patch: * * crash> task -R wake_entry * PID: 847 TASK: ffff94f8038f4000 CPU: 72 COMMAND: "khungtaskd" * * After patch: * * crash> task -R wake_entry * PID: 847 TASK: ffff94f8038f4000 CPU: 72 COMMAND: "khungtaskd" * wake_entry = { * next = 0x0 * }, * * Signed-off-by: Tao Liu * * commit f02c8e87fccb1a92fbc025883bc69b6467a4e6c8 * Author: Huang Shijie * Date: Mon Aug 22 09:29:32 2022 +0000 * * arm64: use TCR_EL1_T1SZ to get the correct info if vabits_actual is * missing * * After kernel commit 0d9b1ffefabe ("arm64: mm: make vabits_actual a build * time constant if possible"), the vabits_actual is not compiled to kernel * symbols when "VA_BITS > 48" is false. * * So the crash will not find the vabits_actual symbol, and it will fail * in the end like this: * * # ./crash * ... * WARNING: VA_BITS: calculated: 46 vmcoreinfo: 48 * crash: invalid kernel virtual address: ffff88177ffff000 type: "pud page" * * This patch introduces the arm64_set_va_bits_by_tcr(), and if crash * cannot find vabits_actual symbol, it will use the TCR_EL1_T1SZ * register to get the correct VA_BITS_ACTUAL/VA_BITS/VA_START. * * Tested this patch with: * 1.) the live mode with /proc/kcore * 2.) the kdump file with /proc/vmcore. * * Signed-off-by: Huang Shijie * * commit 4c85e982d25a259f81b5e8c230a67d40d4527ddf * Author: Lianbo Jiang * Date: Wed Aug 24 10:19:20 2022 +0800 * * gdb: fix for assigning NULL to std::string * * When trying to load a module with "mod -s" without its separated debug * info file installed, the crash utility will abort as below: * * crash> mod -s kpatch_test kpatch_test.ko * ... * terminate called after throwing an instance of 'std::logic_error' * what(): basic_string::_M_construct null not valid * Aborted (core dumped) * * Let's return the std::string() instead of std::string(NULL) when a * string is null, because the check_specified_kernel_debug_file() may * return NULL. * * Signed-off-by: Lianbo Jiang * * commit c2743ad474529951ace2b8ec712bf373f3a07d4c * Author: Kazuhito Hagio * Date: Mon Aug 22 11:59:46 2022 +0900 * * Makefile: Fix unnecessary re-patching with coreutils-9.0 * * "sum" command in coreutils-9.0 (e.g. Fedora 36) started to output a file * name. As a result, "make" always detects a change of gdb-10.2.patch * wrongly and re-applies it unnecessarily. * * Use standard input to fix it and "md5sum" to improve detection. * * Signed-off-by: Kazuhito Hagio * * commit 763e221388219b07bd949a9ba48768856908ec6d * Author: Lianbo Jiang * Date: Thu Jul 28 15:11:20 2022 +0800 * * x86_64: Fix for AMD SME issue * * Kernel commit changes(see [1]/[2]) may cause the failure of * crash-utility with the following error: * * #./crash /home/vmlinux /home/vmcore * ... * For help, type "help". * Type "apropos word" to search for commands related to "word"... * * crash: seek error: physical address: 8000760a14000 type: "p4d page" * * Let's get the "NUMBER(sme_mask)" from vmcoreinfo, and try to remove * the C-bit from the page table entries, the intention is to get the * true physical address. * * Related kernel commits: * [1] aad983913d77 ("x86/mm/encrypt: Simplify sme_populate_pgd() and sme_populate_pgd_large()") * [2] e7d445ab26db ("x86/sme: Use #define USE_EARLY_PGTABLE_L5 in mem_encrypt_identity.c") * * Signed-off-by: Lianbo Jiang * * commit f37df7df8a50519d80f04fb48499287892021575 * Author: Kazuhito Hagio * Date: Fri Jul 22 13:44:50 2022 +0900 * * Fix gcc-11 compiler warning on kvmdump.c * * Without the patch, the following gcc-11 compiler warning is emitted for * kvmdump.c: * * In function 'write_mapfile_registers', * inlined from 'write_mapfile_trailer' at kvmdump.c:947:3, * inlined from 'kvmdump_init' at kvmdump.c:145:4: * kvmdump.c:972:13: warning: 'write' reading 8 bytes from a region of size 4 [-Wstringop-overread] * 972 | if (write(kvm->mapfd, &kvm->cpu_devices, sizeof(uint64_t)) != sizeof(uint64_t)) * | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ * In file included from kvmdump.c:19: * kvmdump.c: In function 'kvmdump_init': * kvmdump.h:67:18: note: source object 'cpu_devices' of size 4 * 67 | uint32_t cpu_devices; * | ^~~~~~~~~~~ * In file included from defs.h:26, * from kvmdump.c:18: * /usr/include/unistd.h:378:16: note: in a call to function 'write' declared with attribute 'access (read_only, 2, 3)' * 378 | extern ssize_t write (int __fd, const void *__buf, size_t __n) __wur * | ^~~~~ * * Signed-off-by: Kazuhito Hagio * * commit 7591e3c07cef4900f6b0ca797270cb7527fb4e29 * Author: Kazuhito Hagio * Date: Fri Jul 22 13:44:50 2022 +0900 * * Fix gcc-11 compiler warning on makedumpfile.c * * Without the patch, the following gcc-11 compiler warning is emitted for * makedumpfile.c: * * In function 'flattened_format_get_osrelease', * inlined from 'check_flattened_format' at makedumpfile.c:236:3: * makedumpfile.c:392:9: warning: 'fclose' called on pointer returned from a mismatched allocation function [-Wmismatched-dealloc] * 392 | fclose(pipe); * | ^~~~~~~~~~~~ * makedumpfile.c: In function 'check_flattened_format': * makedumpfile.c:380:21: note: returned from 'popen' * 380 | if ((pipe = popen(buf, "r")) == NULL) * | ^~~~~~~~~~~~~~~ * * Signed-off-by: Kazuhito Hagio * * commit b9c0ed124e422b7e0b1526afa3a691ad0579607b * Author: Kazuhito Hagio * Date: Fri Jul 22 13:44:50 2022 +0900 * * Fix gcc-11 compiler warning on symbols.c * * Without the patch, the following gcc-11 compiler warning is emitted for * symbols.c: * * symbols.c: In function 'cmd_p': * symbols.c:7412:38: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] * 7412 | *(cpuspec-1) = ':'; * | ~~~~~~~~~~~~~^~~~~ * * Signed-off-by: Kazuhito Hagio * * commit f374aca364b7e8809f122678aefed1010e3c94bd * Author: Kazuhito Hagio * Date: Fri Jul 22 13:44:50 2022 +0900 * * Fix gcc-11 compiler warnings on filesys.c * * Without the patch, the following gcc-11 compiler warnings are emitted * for filesys.c: * * filesys.c: In function 'mount_point': * filesys.c:718:17: warning: 'pclose' called on pointer returned from a mismatched allocation function [-Wmismatched-dealloc] * 718 | pclose(mp); * | ^~~~~~~~~~ * filesys.c:709:27: note: returned from 'fopen' * 709 | if ((mp = fopen(mntfile, "r")) == NULL) * | ^~~~~~~~~~~~~~~~~~~ * filesys.c:738:17: warning: 'pclose' called on pointer returned from a mismatched allocation function [-Wmismatched-dealloc] * 738 | pclose(mp); * | ^~~~~~~~~~ * filesys.c:723:27: note: returned from 'fopen' * 723 | if ((mp = fopen(mntfile, "r")) == NULL) * | ^~~~~~~~~~~~~~~~~~~ * * Signed-off-by: Kazuhito Hagio * * commit 6722ea102264b54529afc19d347a3a7473670fdd * Author: Qianli Zhao * Date: Mon Jul 4 16:40:01 2022 +0800 * * arm64: Fix for st->_stext_vmlinux not initialized when set VA_BITS_ACTUAL * * Setting st->_stext_vmlinux to UNINITIALIZED to search for "_stext" * from the vmlinux. In the scenario where kaslr is disabled and * without vmcoreinfo, crash will get the wrong MODULES/VMALLOC ranges * and cause a failure in parsing a raw RAM dumpfile. * * Signed-off-by: Qianli Zhao * * commit 93b880217de239268315be942c10dfce5649db8b * Author: Hari Bathini * Date: Mon Jul 4 10:55:46 2022 +0530 * * ppc64: use a variable for machdep->machspec * * machdpep->machspec is referred to multiple times. The compiler would * likely optimize this but nonetheless, use a variable to optimize in * coding and also improve readability. No functional change. * * Signed-off-by: Hari Bathini * * commit 4dc2f1c32d1c99586e67032c9cd62c5c4334049c * Author: Hari Bathini * Date: Mon Jul 4 10:55:45 2022 +0530 * * ppc64: print emergency stacks info with 'mach' command * * Print top address of emergency stacks with 'mach' command. * * Signed-off-by: Hari Bathini * * commit cdd57e8b16aba2f5714673368d6dbc7565d59841 * Author: Hari Bathini * Date: Mon Jul 4 10:55:44 2022 +0530 * * ppc64: handle backtrace when CPU is in an emergency stack * * A CPU could be in an emergency stack when it is running in real mode * or any special scenario like TM bad thing. Also, there are dedicated * emergency stacks for machine check and system reset interrupt. Right * now, no backtrace is provided if a CPU is in any of these stacks. * This change ensures backtrace is processed appropriately even when * a CPU is in any one of these emergency stacks. Also, if stack info * cannot be found, print that message always instead of only when * verbose logs are enabled. * * Related kernel commits: * 729b0f715371 ("powerpc/book3s: Introduce exclusive emergency stack for machine check exception.") * b1ee8a3de579 ("powerpc/64s: Dedicated system reset interrupt stack") * * Signed-off-by: Hari Bathini * * commit 4d1b968abb286ea39ea080ae073b0e2b5bfe6c4e * Author: Hari Bathini * Date: Mon Jul 4 10:55:43 2022 +0530 * * ppc64: rename ppc64_paca_init to ppc64_paca_percpu_offset_init * * ppc64_paca_init() function is specifically used to initialize percpu * data_offset for kernels older than v2.6.36. So, the name is slightly * misleading. Rename it to ppc64_paca_percpu_offset_init to reflect its * purpose. * * Signed-off-by: Hari Bathini * * commit 3ee5956721d9a67fe8d4c6d5022aa022c5f9a11c * Author: Hari Bathini * Date: Mon Jul 4 10:55:42 2022 +0530 * * ppc64: dynamically allocate h/w interrupt stack * * Only older kernel (v2.4) used h/w interrupt stack to store frames when * CPU received IPI. Memory used for this in 'struct machine_specific' is * useless for later kernels. For the sake of backward compatibility keep * h/w interrupt stack but dynamically allocate memory for it and save * some bytes from being wasted. * * Signed-off-by: Hari Bathini * * commit c67ce5bbb8e37d28f1c26b239b203a6561f574c1 * Author: Hari Bathini * Date: Mon Jul 4 10:55:41 2022 +0530 * * ppc64: fix bt for '-S' case * * Passing '-S' option to 'bt' command was intended to specify the stack * pointer manually. But get_stack_frame() handling on ppc64 is ignoring * this option altogether. Fix it. * * Signed-off-by: Hari Bathini * * commit d8869b08548362345fc34e4cf17a1eac9bddec6b * Author: Kazuhito Hagio * Date: Wed Jun 22 08:32:59 2022 +0900 * * Extend field length of task attributes * * Nowadays, some machines have many CPU cores and memory, and some * distributions have a larger kernel.pid_max parameter, e.g. 7 digits. * This impairs the readability of a few commands, especially "ps" and * "ps -l|-m" options. * * Let's extend the field length of the task attributes, PID, CPU, VSZ, * and RSS to improve the readability. * * Without the patch: * crash> ps * PID PPID CPU TASK ST %MEM VSZ RSS COMM * ... * 2802197 2699997 2 ffff916f63c40000 IN 0.0 307212 10688 timer * 2802277 1 0 ffff9161a25bb080 IN 0.0 169040 2744 gpg-agent * 2806711 3167854 10 ffff9167fc498000 IN 0.0 127208 6508 su * 2806719 2806711 1 ffff91633c3a48c0 IN 0.0 29452 6416 bash * 2988346 1 5 ffff916f7c629840 IN 2.8 9342476 1917384 qemu-kvm * * With the patch: * crash> ps * PID PPID CPU TASK ST %MEM VSZ RSS COMM * ... * 2802197 2699997 2 ffff916f63c40000 IN 0.0 307212 10688 timer * 2802277 1 0 ffff9161a25bb080 IN 0.0 169040 2744 gpg-agent * 2806711 3167854 10 ffff9167fc498000 IN 0.0 127208 6508 su * 2806719 2806711 1 ffff91633c3a48c0 IN 0.0 29452 6416 bash * 2988346 1 5 ffff916f7c629840 IN 2.8 9342476 1917384 qemu-kvm * * Signed-off-by: Kazuhito Hagio * * commit 85f39061390f095e73d9037f015cec077441eb13 * Author: Kazuhito Hagio * Date: Wed Jun 15 10:50:13 2022 +0900 * * Fix for "dev" command on Linux 5.11 and later * * The following kernel commits eventually removed the bdev_map array in * Linux v5.11 kernel: * * e418de3abcda ("block: switch gendisk lookup to a simple xarray") * 22ae8ce8b892 ("block: simplify bdev/disk lookup in blkdev_get") * * Without the patch, the "dev" command fails to dump block device data * with the following error: * * crash> dev * ... * dev: blkdevs or all_bdevs: symbols do not exist * * To get block device's gendisk, search blockdev_superblock.s_inodes * instead of bdev_map. * * Signed-off-by: Kazuhito Hagio * * commit b8f2ae6b494d706b1e4855b439c4930a6a6a2f5c * Author: Kazuhito Hagio * Date: Fri Jun 10 16:00:14 2022 +0900 * * sbitmapq: Limit kernels without sbitmap again * * commit 364b2e413c69 ("sbitmapq: remove struct and member validation * in sbitmapq_init()") allowed the use of the "sbitmapq" command * unconditionally. Without the patch, the command fails with the * following error on kernels without sbitmap: * * crash> sbitmapq ffff88015796e550 * * sbitmapq: invalid structure member offset: sbitmap_queue_sb * FILE: sbitmap.c LINE: 385 FUNCTION: sbitmap_queue_context_load() * * Now the command supports Linux 4.9 and later kernels since it was * abstracted out, so it can be limited by the non-existence of the * sbitmap structure. * * Signed-off-by: Kazuhito Hagio * * commit 6bc3b74c6e2b0aaebe1bc164594e53b010efef56 * Author: Kazuhito Hagio * Date: Fri Jun 10 15:52:34 2022 +0900 * * sbitmapq: Fix for kernels without struct wait_queue_head * * The current struct wait_queue_head was renamed by kernel commit * 9d9d676f595b ("sched/wait: Standardize internal naming of wait-queue heads") * at Linux 4.13. Without the patch, on earlier kernels the "sbitmapq" * command fails with the following error: * * crash> sbitmapq ffff8801790b3b50 * depth = 128 * busy = 0 * bits_per_word = 32 * ... * sbitmapq: invalid structure member offset: wait_queue_head_head * FILE: sbitmap.c LINE: 344 FUNCTION: sbitmap_queue_show() * * Signed-off-by: Kazuhito Hagio * * commit c07068266b41450ca6821ee0a1a3adf34206015f * Author: Kazuhito Hagio * Date: Fri Jun 10 15:21:53 2022 +0900 * * Make "dev -d|-D" options parse sbitmap on Linux 4.18 and later * * There have been a few reports that the "dev -d|-D" options displayed * incorrect I/O stats due to racy blk_mq_ctx.rq_* counters. To fix it, * make the options parse sbitmap to count I/O stats on Linux 4.18 and * later kernels, which include RHEL8 ones. * * To do this, adjust to the blk_mq_tags structure of Linux 5.10 through * 5.15 kernels, which contain kernel commit 222a5ae03cdd ("blk-mq: Use * pointers for blk_mq_tags bitmap tags") and do not contain ae0f1a732f4a * ("blk-mq: Stop using pointers for blk_mq_tags bitmap tags"). * * Signed-off-by: Kazuhito Hagio * * commit 12fe6c7cdd768f87ce6e903a2bbfb0c0591585c5 * Author: Kazuhito Hagio * Date: Fri Jun 10 11:49:47 2022 +0900 * * sbitmapq: Fix for sbitmap_queue without min_shallow_depth member * * The sbitmap_queue.min_shallow_depth member was added by kernel commit * a327553965de ("sbitmap: fix missed wakeups caused by sbitmap_queue_get_shallow()") * at Linux 4.18. Without the patch, on earlier kernels the "sbitmapq" * command fails with the following error: * * crash> sbitmapq ffff89bb7638ee50 * * sbitmapq: invalid structure member offset: sbitmap_queue_min_shallow_depth * FILE: sbitmap.c LINE: 398 FUNCTION: sbitmap_queue_context_load() * * Signed-off-by: Kazuhito Hagio * * commit 0d3e86fee5eead93b521a0e20a0e099ede4ab72b * Author: Kazuhito Hagio * Date: Fri Jun 10 11:49:47 2022 +0900 * * sbitmapq: Fix for sbitmap_word without cleared member * * The sbitmap_word.cleared member was added by kernel commit ea86ea2cdced * ("sbitmap: ammortize cost of clearing bits") at Linux 5.0. Without the * patch, on earlier kernels the "sbitmapq" command fails with the * following error: * * crash> sbitmapq ffff8f1a3611cf10 * * sbitmapq: invalid structure member offset: sbitmap_word_cleared * FILE: sbitmap.c LINE: 92 FUNCTION: __sbitmap_weight() * * Signed-off-by: Kazuhito Hagio * * commit 9ce31a14d1083cbb2beb4a8e6eb7b88234b79a99 * Author: Kazuhito Hagio * Date: Fri Jun 10 11:49:47 2022 +0900 * * sbitmapq: Fix for sbitmap_queue without ws_active member * * The sbitmap_queue.ws_active member was added by kernel commit 5d2ee7122c73 * ("sbitmap: optimize wakeup check") at Linux 5.0. Without the patch, on * earlier kernels the "sbitmapq" command fails with the following error: * * crash> sbitmapq ffff8f1a3611cf10 * * sbitmapq: invalid structure member offset: sbitmap_queue_ws_active * FILE: sbitmap.c LINE: 393 FUNCTION: sbitmap_queue_context_load() * * Signed-off-by: Kazuhito Hagio * * commit c672d7a4c290712b32c54329cbdc1e74d122e813 * Author: Lianbo Jiang * Date: Mon Jun 6 19:09:16 2022 +0800 * * Doc: update man page for the "bpf" and "sbitmapq" commands * * The information of the "bpf" and "sbitmapq" commands is missing in the man * page of the crash utility. Let's add it to the man page. * * Signed-off-by: Lianbo Jiang * * commit 68ce0b9a35d77d767872dd1a729c50e4695a30a8 * Author: Lianbo Jiang * Date: Thu Jun 2 20:12:56 2022 +0800 * * Fix for "dev -d|-D" options to support blk-mq change on Linux v5.18-rc1 * * Kernel commit 4e5cc99e1e48 ("blk-mq: manage hctx map via xarray") removed * the "queue_hw_ctx" member from struct request_queue at Linux v5.18-rc1, * and replaced it with a struct xarray "hctx_table". Without the patch, the * "dev -d|-D" options will print an error: * * crash> dev -d * MAJOR GENDISK NAME REQUEST_QUEUE TOTAL READ WRITE * * dev: invalid structure member offset: request_queue_queue_hw_ctx * * With the patch: * crash> dev -d * MAJOR GENDISK NAME REQUEST_QUEUE TOTAL READ WRITE * 8 ffff8e99d0a1ae00 sda ffff8e9c14c59980 10 6 4 * * Signed-off-by: Lianbo Jiang * * commit 7095c8fd029e3a33117e3b67de73f504686ebfe2 * Author: Lianbo Jiang * Date: Thu Jun 2 20:12:55 2022 +0800 * * Enhance "dev -d|-D" options to support blk-mq sbitmap * * Since Linux 5.16-rc1, which kernel commit 9a14d6ce4135 ("block: remove * debugfs blk_mq_ctx dispatched/merged/completed attributes") removed the * members from struct blk_mq_ctx, crash has not displayed disk I/O statistics * for multiqueue (blk-mq) devices. * * Let's parse the sbitmap in blk-mq layer to support it. * * Signed-off-by: Lianbo Jiang * Signed-off-by: Kazuhito Hagio * * commit dda5b2d02b8d8de1264f84b6267582aa7a1e5a57 * Author: Kazuhito Hagio * Date: Tue May 31 17:12:16 2022 +0900 * * gdb: print details of unnamed struct and union * * Currently gdb's "ptype" command does not print the details of unnamed * structure and union deeper than second level in a structure, it prints * only "{...}" instead. And crash's "struct" and similar commands also * inherit this behavior, so we cannot get the full information of them. * * To print the details of them, change the show variable when it is an * unnamed one like crash-7.x. * * Without the patch: * crash> struct -o page * struct page { * [0] unsigned long flags; * union { * struct {...}; * struct {...}; * ... * * With the patch: * crash> struct -o page * struct page { * [0] unsigned long flags; * union { * struct { * [8] struct list_head lru; * [24] struct address_space *mapping; * [32] unsigned long index; * [40] unsigned long private; * }; * struct { * [8] dma_addr_t dma_addr; * }; * ... * * Signed-off-by: Kazuhito Hagio * * commit 0f162febebc4d11a165dd40cee00f3b0ba691a52 * Author: Qi Zheng * Date: Tue May 24 20:25:54 2022 +0800 * * bt: arm64: add support for 'bt -n idle' * * The '-n idle' option of bt command can help us filter the * stack of the idle process when debugging the dumpfiles * captured by kdump. * * This patch supports this feature on ARM64. * * Signed-off-by: Qi Zheng * * commit 6833262bf87177d8affe4f91b2e7d2c76ecdf636 * Author: Qi Zheng * Date: Tue May 24 20:25:53 2022 +0800 * * bt: x86_64: filter out idle task stack * * When we use crash to troubleshoot softlockup and other problems, * we often use the 'bt -a' command to print the stacks of running * processes on all CPUs. But now some servers have hundreds of CPUs * (such as AMD machines), which causes the 'bt -a' command to output * a lot of process stacks. And many of these stacks are the stacks * of the idle process, which are not needed by us. * * Therefore, in order to reduce this part of the interference information, * this patch adds the -n option to the bt command. When we specify * '-n idle' (meaning no idle), the stack of the idle process will be * filtered out, thus speeding up our troubleshooting. * * And the option works only for crash dumps captured by kdump. * * The command output is as follows: * crash> bt -a -n idle * [...] * PID: 0 TASK: ffff889ff8c34380 CPU: 8 COMMAND: "swapper/8" * * PID: 0 TASK: ffff889ff8c32d00 CPU: 9 COMMAND: "swapper/9" * * PID: 0 TASK: ffff889ff8c31680 CPU: 10 COMMAND: "swapper/10" * * PID: 0 TASK: ffff889ff8c35a00 CPU: 11 COMMAND: "swapper/11" * * PID: 0 TASK: ffff889ff8c3c380 CPU: 12 COMMAND: "swapper/12" * * PID: 150773 TASK: ffff889fe85a1680 CPU: 13 COMMAND: "bash" * #0 [ffffc9000d35bcd0] machine_kexec at ffffffff8105a407 * #1 [ffffc9000d35bd28] __crash_kexec at ffffffff8113033d * #2 [ffffc9000d35bdf0] panic at ffffffff81081930 * #3 [ffffc9000d35be70] sysrq_handle_crash at ffffffff814e38d1 * #4 [ffffc9000d35be78] __handle_sysrq.cold.12 at ffffffff814e4175 * #5 [ffffc9000d35bea8] write_sysrq_trigger at ffffffff814e404b * #6 [ffffc9000d35beb8] proc_reg_write at ffffffff81330d86 * #7 [ffffc9000d35bed0] vfs_write at ffffffff812a72d5 * #8 [ffffc9000d35bf00] ksys_write at ffffffff812a7579 * #9 [ffffc9000d35bf38] do_syscall_64 at ffffffff81004259 * RIP: 00007fa7abcdc274 RSP: 00007fffa731f678 RFLAGS: 00000246 * RAX: ffffffffffffffda RBX: 0000000000000002 RCX: 00007fa7abcdc274 * RDX: 0000000000000002 RSI: 0000563ca51ee6d0 RDI: 0000000000000001 * RBP: 0000563ca51ee6d0 R8: 000000000000000a R9: 00007fa7abd6be80 * R10: 000000000000000a R11: 0000000000000246 R12: 00007fa7abdad760 * R13: 0000000000000002 R14: 00007fa7abda8760 R15: 0000000000000002 * ORIG_RAX: 0000000000000001 CS: 0033 SS: 002b * [...] * * Signed-off-by: Qi Zheng * Acked-by: Kazuhito Hagio * Acked-by: Lianbo Jiang * * commit 9705669a49c341402efd8528e8fe809379dd798d * Author: Kazuhito Hagio * Date: Mon May 23 14:48:50 2022 +0900 * * Makefile: add missing crash_target.o to be cleaned * * Signed-off-by: Kazuhito Hagio * * commit 3750803f6ae5f5ad071f86ca916dbbb17b7a83a5 * Author: Lianbo Jiang * Date: Mon May 23 18:04:16 2022 +0800 * * sbitmapq: fix invalid offset for "sbitmap_word_depth" on Linux v5.18-rc1 * * Kernel commit 3301bc53358a ("lib/sbitmap: kill 'depth' from * sbitmap_word") removed the depth member from struct sbitmap_word. * Without the patch, the sbitmapq will fail: * * crash> sbitmapq 0xffff8e99d0dc8010 * * sbitmapq: invalid structure member offset: sbitmap_word_depth * FILE: sbitmap.c LINE: 84 FUNCTION: __sbitmap_weight() * * Signed-off-by: Lianbo Jiang * * commit 530fe6ad7e4d7ff6254596c1219d25ed929e3867 * Author: Lianbo Jiang * Date: Mon May 23 18:04:15 2022 +0800 * * sbitmapq: fix invalid offset for "sbitmap_queue_round_robin" on Linux * v5.13-rc1 * * Kernel commit efe1f3a1d583 ("scsi: sbitmap: Maintain allocation * round_robin in sbitmap") moved the round_robin member from struct * sbitmap_queue to struct sbitmap. Without the patch, the sbitmapq * will fail: * * crash> sbitmapq 0xffff8e99d0dc8010 * * sbitmapq: invalid structure member offset: sbitmap_queue_round_robin * FILE: sbitmap.c LINE: 378 FUNCTION: * sbitmap_queue_context_load() * * Signed-off-by: Lianbo Jiang * * commit a295cb40cd5d24fb5995cc78d29c5def3843d285 * Author: Lianbo Jiang * Date: Mon May 23 18:04:14 2022 +0800 * * sbitmapq: fix invalid offset for "sbitmap_queue_alloc_hint" on Linux v5.13-rc1 * * Kernel commit c548e62bcf6a ("scsi: sbitmap: Move allocation hint * into sbitmap") moved the alloc_hint member from struct sbitmap_queue * to struct sbitmap. Without the patch, the sbitmapq will fail: * * crash> sbitmapq 0xffff8e99d0dc8010 * * sbitmapq: invalid structure member offset: sbitmap_queue_alloc_hint * FILE: sbitmap.c LINE: 365 FUNCTION: sbitmap_queue_context_load() * * Signed-off-by: Lianbo Jiang * * commit 364b2e413c69daf189d2bc0238e3ba9b0dcbd937 * Author: Lianbo Jiang * Date: Mon May 23 18:04:13 2022 +0800 * * sbitmapq: remove struct and member validation in sbitmapq_init() * * Let's remove the struct and member validation from sbitmapq_init(), which * will help the crash to display the actual error when the sbitmapq fails. * * Without the patch: * crash> sbitmapq ffff8e99d0dc8010 * sbitmapq: command not supported or applicable on this architecture or kernel * * With the patch: * crash> sbitmapq ffff8e99d0dc8010 * * sbitmapq: invalid structure member offset: sbitmap_queue_alloc_hint * FILE: sbitmap.c LINE: 365 FUNCTION: sbitmap_queue_context_load() * * Signed-off-by: Lianbo Jiang * * commit ae52398a13fa9a238279114ed671c7c514c154ee * Author: Sourabh Jain * Date: Mon May 9 12:49:56 2022 +0530 * * ppc64: update the NR_CPUS to 8192 * * Since the kernel commit 2d8ae638bb86 ("powerpc: Make the NR_CPUS max 8192") * the NR_CPUS on Linux kernel ranges from 1-8192. So let's match NR_CPUS with * the max NR_CPUS count on the Linux kernel. * * Signed-off-by: Sourabh Jain * * commit 0ca55e460757172879ebc06c1a18c97163711dab * Author: Kazuhito Hagio * Date: Tue May 10 10:27:44 2022 +0900 * * Mark start of 8.0.2 development phase with version 8.0.1++ * * Signed-off-by: Kazuhito Hagio * cryptsetup (2:2.6.0-2) unstable; urgency=low . * libcryptsetup-dev: Add 'Depends: libargon2-dev, libblkid-dev, libdevmapper-dev, libjson-c-dev, libssl-dev, uuid-dev' to account for libcryptsetup.pc's Requires.private. Closes: #1025054. cryptsetup (2:2.6.0-1) unstable; urgency=low . * New upstream release 2.6.0. . cryptsetup (2:2.6.0~rc0-1) experimental; urgency=medium . * New upstream release candidate 2.6.0, introducing support for handling macOS FileVault2 devices (FVAULT2). The new version of FileVault based on the APFS filesystem used in recent macOS versions is currently not supported: only the (legacy) FileVault2 format based on Core Storage and HFS+ filesystem (introduced in MacOS X 10.7 Lion) is supported. Moreover header formatting and changes are not supported; cryptsetup never changes the metadata on the device. Closes: #923513. * Update d/copyright for 2:2.6.0~rc0-1. * Ship cryptsetup-fvault2Dump(8) and cryptsetup-fvault2Open(8) to cryptsetup-bin binary package. * Update d/libcryptsetup12.symbols for 2:2.6.0~rc0-1. * Add 'fvault2' flag to crypttab(5) to force detection of Apple's FileVault2 volumes. * d/rules: Add new target execute_before_dh_auto_test so blhc ignores compilations of tests/*.c. * d/u/metadata: Set 'Security-Contact' upstream metadata field. cryptsetup (2:2.6.0~rc0-1) experimental; urgency=medium . * New upstream release candidate 2.6.0, introducing support for handling macOS FileVault2 devices (FVAULT2). The new version of FileVault based on the APFS filesystem used in recent macOS versions is currently not supported: only the (legacy) FileVault2 format based on Core Storage and HFS+ filesystem (introduced in MacOS X 10.7 Lion) is supported. Moreover header formatting and changes are not supported; cryptsetup never changes the metadata on the device. * Update d/copyright for 2:2.6.0~rc0-1. * Ship cryptsetup-fvault2Dump(8) and cryptsetup-fvault2Open(8) to cryptsetup-bin binary package. * Update d/libcryptsetup12.symbols for 2:2.6.0~rc0-1. * Add 'fvault2' flag to crypttab(5) to force detection of Apple's FileVault2 volumes. * d/rules: Add new target execute_before_dh_auto_test so blhc ignores compilations of tests/*.c. * d/u/metadata: Set 'Security-Contact' upstream metadata field. csoundqt (1.1.1+dfsg0-1) unstable; urgency=medium . * New upstream version 1.1.1+dfsg0 * Build with rtmidi support * Drop desktop patch, applied by upstream * d/copyright: Remove Bach-Invention_1.csd and CC license * Drop obsolete d/csoundqt-examples.lintian-overrides * Add salsa ci config * Change my email address to snd@debian.org dh-python (5.20221202) unstable; urgency=medium . * Deprecate the flit plugin in favour of pyproject. - Reduce the auto-detect score of the flit plugin. * dh_python3: Clean up more license files from dist-info directories. * Write to debhelper.log files, in overrides. * Add support for --remaining-packages to dh_python*. (closes: 1021875) * Add a test that demonstrates building multiple libraries in a single source package. (closes: 1018952) * Remove dh_python2, dh_pypy, and related debhelper sequences, supporting the removal of the Python 2.7 stack before bookworm release. (closes: 942959) django-cas-server (2.0.0-2) unstable; urgency=medium . * Team upload * [aafa77d] d/control: Use dh-sequense-* and add BuildProfileSpecs * [fa6c0de] d/control: Add Multi-Arch: foreign to -doc package * [960b5f9] d/control: Sort binary packages alphabetical * [d55e9f7] d/rules: Drop explicit usage of --with * [37f3170] autopkgtest: Tune setup to run on all Python versions doxygen (1.9.4-3.1) unstable; urgency=medium . * Non-maintainer upload. * Add upstream fix for typo in generated Makefile for LaTeX. (Closes: #1015864) drkonqi (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). dt-schema (2022.08.2-4) unstable; urgency=medium . * autopkgtests: py3versions: use -s instead of -r edfbrowser (1.97+dfsg-1) unstable; urgency=medium . * New upstream version entrypoints (0.4-2) unstable; urgency=medium . * Team upload. * d/gbp.conf: add file and change main branch to 'debian/master' * d/control: correct wrong Maintainer team name. * d/control: build using the generic pybuild pyproject plugin. * d/control, d/tests: make sure the upstream testsuite runs on all available python versions. * d/control: Standard-Versions bump to 4.6.1. No changes. flake8-import-order (0.18.1-3) unstable; urgency=medium . [ Edward Betts ] * Include README.rst in package. . [ Debian Janitor ] * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Update standards version to 4.6.1, no changes needed. flask-bcrypt (1.0.1-2) unstable; urgency=medium . * Team upload. * d/control: add b-d on pytest to force tests to run via something other than the deprecated "python3 setup.py test" command. flatpak-builder (1.2.3-1) unstable; urgency=medium . * New upstream release - Allow cloning submodules from file:// URIs with recent versions of git - Drop patches, applied upstream fmtools (2.0.8+really2.0.7-1) unstable; urgency=medium . * QA upload. * Convert to 3.0 (quilt) format. Closes: #1007601. * d/copyright: Convert to machine-readable format. fonts-gubbi (1.3-7) unstable; urgency=low . [ Kartik Mistry ] * Team upload. * Updated Standards-Version to 4.6.1 . [ Debian Janitor ] * Set Multi-Arch: foreign on package fonts-knda-udeb. fsarchiver (0.8.6-2) unstable; urgency=medium . [ Julian Andres Klode ] * Update XFS test to use a 500MB filesystem as mkfs.xfs now imposes a 300MB minimum size since 6.0.0 . [ Michael Biebl ] * Bump Standards-Version to 4.6.1 games-thumbnails (20221129) unstable; urgency=medium . * Team upload. * d/copyright: Drop Upstream-* fields (native package). * d/control: Drop non-existing Vcs-* fields. * Convert to 3.0 source format (Closes: #1007434). garagemq (0.0~git20200204.15e6a9d+ds-4) unstable; urgency=medium . [ Debian Janitor ] * Set upstream metadata fields: Bug-Database, Bug-Submit. gav (0.9.0-3.2) unstable; urgency=medium . * Non-maintainer upload. * Convert to 3.0 source format. (Closes: #1007617) * d/copyright: Convert to machine-readable format. gav-themes (0.7.3-2.5) unstable; urgency=medium . * Non-maintainer upload. * Convert to 3.0 source format. (Closes: #1007551) geki3 (1.0.3-9) unstable; urgency=medium . * Team upload. * Convert to 3.0 source format. Closes: #1007570 . [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_configure pass --host to ./configure. Closes: #915280 glktermw (1.0.4+git20200122-2.1) unstable; urgency=medium . * Non-maintainer upload. * Trim trailing whitespace. * Upgrade to newer source format 3.0 (Closes: #1007367). * Set debhelper-compat version in Build-Depends. * Bump debhelper from old 11 to 13. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. glulxe (0.5.4-1.1) unstable; urgency=medium . * Non-maintainer upload * Convert to 3.0 source format (Closes: #1007657) * Drop non-existing Vcs fields glymur (0.12.1-1) unstable; urgency=medium . * New upstream release. golang-github-sap-go-hdb (0.100.10-3) unstable; urgency=medium . [ Debian Janitor ] * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. golang-github-svent-go-nbreader (0~20150201-4) unstable; urgency=medium . [ Debian Janitor ] * Bump debhelper from old 11 to 12. * Set debhelper-compat version in Build-Depends. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. gtk+3.0 (3.24.35-2) unstable; urgency=medium . * d/rules: Return to the print backends we previously enabled. lpr and test were enabled during the move to Meson, but we didn't enable them in the past and they don't seem to be desirable. (Closes: #1025271) * d/rules: Remove redundant gtk_doc option. In both cases (documentation enabled or disabled) we override this later. * d/patches: Update to upstream commit 3.24.35-15-g9c60b8d4d4 - Load icon themes from ~/.local/share/icons and ~/.icons under Wayland - Fix links in documentation to point to correct git branch for GTK 3 - Translation update: pt_BR * Remove dpkg trigger on old immodules search path. GTK 3 hasn't searched this path since 2015, so it was no longer useful to have a trigger on it. * d/rules: Remove redundant --libdir override. We get the correct library directory from dh_auto_configure. * Install emoji data for non-English languages. With Autotools this was incorporated into the shared library, but with Meson it's loaded on-demand. * d/control.in: Disable API documentation under nodoc build profile * d/control.in, d/rules: Disable man pages under nodoc build-profile * d/control.in: Don't depend on gtk-doc-tools under nodoc build-profile. This was needed at autoreconf time when we built with Autotools, but not with Meson. * Force software rendering during tests. Workaround for Mesa regression #1025312. We expect only software rendering to be available in a buildd or autopkgtest environment anyway. gyoto (1.4.4-8) unstable; urgency=low . * Bug fix: "FTBFS in unstable on arm64, mipsel and s390x", thanks to Graham Inggs (Closes: #1017050). * Bug fix: replace "_fromnumpy" by ".fromnumpy" in several places. The fact that "_fromnumpy" used to work was probably a Swig bug. * In Python plug-in, use getfullargspec instead of deprecated getargspec when it exists. gyoto (1.4.4-7) unstable; urgency=low . * Bug fix: "StarTrace::tmin_ is not initialised", thanks to Paul Gevers (Closes: #994784). Reverted affected test gyoto-mpi to let gyoto spawn the additional processes again. gyoto (1.4.4-6) unstable; urgency=low . * Bug fix: "ftbfs with GCC-11", thanks to Matthias Klose (Closes: #984164). gyoto (1.4.4-5) unstable; urgency=high . * Change gyoto-mpi test to let openmpi launch the process instead of having gyoto spawn them. This should work around #994784. gyoto (1.4.4-4) unstable; urgency=medium . * Bug fix: "ftbfs with autoconf 2.70", thanks to Matthias Klose and Étienne Mollier (Closes: #978831). * Bump standards version * Update watch file * Replace ADTTMP by AUTOPKGTEST_TMP in Debian tests * Remove '--dbgsym-migration' from rules file (migration is complete) * Install ygyoto_idx.h gyoto (1.4.4-3) unstable; urgency=high . * Avoid FTBFS on mips64el due to bug in libflint-arb2 gyoto (1.4.4-2) unstable; urgency=high . * Bug fix: "gyoto FTBFS on armel, armhf, mipsel and mips64el", thanks to peter green (Closes: #953151). Skip FlaredDiskSynchrotron in Python test suite to avoid triggering a minor bug that is not fixable without breaking the ABI. gyoto (1.4.4-1) unstable; urgency=low . * New upstream release * Rename variable ADTTMP to AUTOPKGTEST_TMP in test suite. gyoto (1.4.3-2) unstable; urgency=low . * Bug fix: "gyoto build depends on the removed swig3.0", thanks to Adrian Bunk (Closes: #952598). gyoto (1.4.3-1) unstable; urgency=low . * New upstream release gyoto (1.4.1-1) unstable; urgency=low . * New upstream release * Bump standards version to 4.4.1, no changes needed * Recommend packages needed to write videos. Add corresponding test case. gyoto (1.3.6-1) unstable; urgency=medium . * New upstream release * Bug fix: "Python2 removal in sid/bullseye", thanks to Matthias Klose (Closes: #936682). gyoto (1.3.5-1) unstable; urgency=low . * New upstream release * Bump standards version to 4.4.0, no changes needed gyoto (1.3.1-1) unstable; urgency=medium . * Bug fix: "both packages ship /usr/share/doc/gyoto/README.md", thanks to Andreas Beckmann (Closes: #919792). * Bug fix: "autopkgtest failure on i386", thanks to Graham Inggs (Closes: #919983). gyoto (1.3.0-1) unstable; urgency=low . * New upstream release * Update debhleper compatibility to level 12 * Move most documentation in the gyoto-doc package to /usr/share/doc/gyoto/ * Build-depend on libflint-arb-dev and libflint-dev * Migrate to automatic dbgsym debug packages * Comply with policy 4.3.0 gyoto (1.2.0-4) unstable; urgency=low . * Prepare for Boost >= 1.64. New patch boost1.64. gyoto (1.2.0-3) unstable; urgency=low . * Bug fix: "requires rebuild against GCC 7 and symbols/shlibs bump", thanks to jcowgill@debian.org; (Closes: #871283). gyoto (1.2.0-2) unstable; urgency=low . * Fix autopkgtest suite. gyoto (1.2.0-1) unstable; urgency=low . * Reupload to unstable gyoto (1.2.0-1~exp1) experimental; urgency=medium . * New upstream release. gyoto (1.1.3-1) unstable; urgency=high . * New upstream release gyoto (1.1.2-1) unstable; urgency=low . * New upstream release * Fix autopkgtest suite gyoto (1.1.1-4) unstable; urgency=high . * Merge changes from experimental: + build the lorene plug-in; + instead of patching Gyoto to wprk around #844495, patch Boost.multiprecision at build time wxhen we recognize the buggy implementation; + look harder for this bug in the test suite. gyoto (1.1.1-3+lorene4) experimental; urgency=medium . * Instead of patching Gyoto, patch the buggy Boost.multiprecision at build time. gyoto (1.1.1-3+lorene3) experimental; urgency=high . * Rebuild with new lorene. * Activate #844495 workaround on all architectures. * Look even harder for #844495. gyoto (1.1.1-3+lorene2) experimental; urgency=medium . * Tweak test suite to look harder for Boost.multiprecision locking bug (#844495). gyoto (1.1.1-3+lorene1) experimental; urgency=low . * Compile the LORENE plug-in. gyoto (1.1.1-3) unstable; urgency=medium . * Bug fix: "FTBFS with boost1.62" (Closes: #844490). gyoto (1.1.1-2) unstable; urgency=low . * The gyoto meta-package depends on the corresponding version of each actual gyoto package. * The libgyoto5 package depends on the same version of gyoto-bin and on mpi-default-bin. * Fix the python auopkgtests by unsetting GYOTO_PLUGINS. * Fix dependencies of gyoto-dbg. gyoto (1.1.1-1) unstable; urgency=low . * New upstream release. * Add Dependencies and Recommends as appropriate for libgyoto5-dev. * Ship plug-ins/null as example for libgyoto5-dev. * Make sure the right MPI implementation is used and patch gyoto.pc to actually give useful information about MPICXX and CXX. gyoto (1.1.0-3) unstable; urgency=low . * Bug fix: "arch-dependent file in "Multi-Arch: same" package", thanks to Jakub Wilk (Closes: #839810). gyoto (1.1.0-2) unstable; urgency=low . * Add Multi-Arch field for each binary package * Reactivate test suite on kfreebsd gyoto (1.1.0-1) experimental; urgency=low . * New upstream release * Rename the gyoto package to gyoto-bin and add a new gyoto meta-package package that intalls everything a Gyoto user would expect. * Move examples from gyoto-bin to libgyoto5 package. * Include the Python plug-ins for Gyoto in the respective python*-gyoto packages. gyoto (1.0.2-3) unstable; urgency=low . * Bug fix: "building on kfreebsd", thanks to Jon Boden (Closes: #829029). * Checked against Policy 3.9.8. gyoto (1.0.2-2) unstable; urgency=low . * Bug fix: "FTBFS: gyoto.C: Error initializing libgyoto", thanks to Mattia Rizzolo (Closes: #813725). * Bug fix: "please make the build reproducible", thanks to Chris Lamb (Closes: #797518). * Bump Standards-Version to 3.9.7. No change required. gyoto (1.0.2-1) unstable; urgency=low . * New upstream release * Bug fix: "ftbfs with GCC-5", thanks to Matthias Klose (Closes: #777893). gyoto (1.0.1-3) unstable; urgency=low . * Bug fix: "FTBFS on 32-bit systems (assumes size_t is unsigned long)", thanks to Aaron M. Ucko (Closes: #787725). * Switch to dh-autoreconf since we patch configure.ac. gyoto (1.0.1-2) unstable; urgency=low . * Fix debian/copyright to reflect the doxy2swig.py author to use license BSD-3-clause instead of BSD-2-clause. gyoto (0.2.3-1) unstable; urgency=medium . * New upstream release * Move to debian-astro team gyoto (0.2.2-1) unstable; urgency=medium . * Bug fix: "Please build-depends on libcfitsio-dev instead of libcfitsio3-dev", thanks to Aurelien Jarno (Closes: #761709). * Check against Policy 3.9.6 gyoto (0.2.1-2) unstable; urgency=medium . * Remove obsolete lintian overrides * Bug fix: "libgyoto2 and libgyoto1: error when trying to install together", thanks to Ralf Treinen (Closes: #760444). gyoto (0.2.1-1) unstable; urgency=low . * New upstream release * Bump SONAME * Add manual to gyoto-doc * Check against standards version 3.9.5 * Bug fix: "use autotools-dev to update config.{sub, guess} and manually patch libtool for ppc64el", thanks to Logan Rosen (Closes: #748518). gyoto (0.1.0-2) unstable; urgency=low . * Bug fix: "fails to upgrade from 'testing' - trying to overwrite /usr/include/Gyoto/Gyoto.h", thanks to Andreas Beckmann (Closes: #718629). gyoto (0.1.0-1) unstable; urgency=low . * New upstream release gyoto (0.0.3-5) unstable; urgency=low * skip test suite on mips as lucatelli fails on it (but it runs fine on other boxes). (Closes: 681452) gyoto (0.0.3-4) unstable; urgency=low * gyoto-dbg must not depend on gyoto on kfreebsd-*, else it is uninstallable on these archs. gyoto (0.0.3-3) unstable; urgency=low * debian/control Architectures fields should not be folded: previous upload led to missing binary packages for some archs. gyoto (0.0.3-2) unstable; urgency=low * Bug fix: "FTBFS on kfreebsd-i386 and kfreebsd-amd64 (test suite)", (Closes: #679923). The previous "fix" did not work at all. The library and the Yorick interface work fine, but not the stand-alone application. Disable the "gyoto" binary package and the test suite on kfreebsd-*. gyoto (0.0.3-1+exp1) experimental; urgency=low * Bug fix: "FTBFS on kfreebsd-i386 and kfreebsd-amd64 (test suite)" (Closes: #679923). * Tentative bug fix: "don't rely on yorick to pass the fortified build flags" using patch fix_679923_kfreebsd_FTBFS (Closes: #680242). gyoto (0.0.3-1) unstable; urgency=low * Initial release (Closes: #640809) haproxy (2.6.7-1) unstable; urgency=medium . * New upstream release. healpix-java (3.60+ds-5) unstable; urgency=medium . * Team upload. * Fix replacement of js scripts (Closes: #1022373) * check DEB_BUILD_OPTIONS against nocheck when overriding dh_auto_test ibus-table-others (1.3.14+ds-1) unstable; urgency=medium . * Team upload. * New upstream release. * debian/copyright: Update information according to upstream changes. ice-builder-gradle (1.4.5-2) unstable; urgency=medium . * Fix OpenJDK 17 build failure #1011923 jdupes (1.21.1-1) unstable; urgency=medium . * New upstream version 1.21.1. * debian/patches/010_fix-dedup-btrfs.patch: removed because the upstream released a fixed the source code. Thanks. jeepney (0.8.0-3) unstable; urgency=medium . * Team upload. * d/control: build using the generic pyproject pybuild plugin. * d/control: use 'execute_after_' instead of 'override_' * d/control: Standards-Version bump to 4.6.1. No changes. jsonpickle (3.0.0+dfsg1-1) unstable; urgency=medium . * Team upload. * New upstream version. (Closes: #1024953) * d/patches: remove 'do-not-test-with-black.patch', as it's no longer relevant. * d/control, d/tests/control: refresh build dependencies. * Don't run tests with test coverage or flake8. * Skip tests/ecdsa_test.py, it fails for no good reason. juce (7.0.3~ds0-1) unstable; urgency=medium . * New upstream version 7.0.3~ds0 + Refresh patches * Modernize 'licensecheck' target + Re-generate d/copyright_hints kactivitymanagerd (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kazam (1.4.5-6) unstable; urgency=medium . [ Debian Janitor ] * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on python3-all. + kazam: Drop versioned constraint on gstreamer1.0-plugins-good in Depends. * Set upstream metadata fields: Repository-Browse. * Update standards version to 4.1.5, no changes needed. kcemu (0.5.2+dfsg-1) unstable; urgency=medium . * New upstream release * Add upstream changelog to debian/docs * Fix file paths in debian/kcemu.manpages * Drop debian/patches/0001-Fix-declaration-of-static-members- in-class-Plotter.patch, fixed upstream * Update debhelper version to 12 and switch to debhelper-compat * Update standards version to 4.6.1 in debian/control kde-cli-tools (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. kde-gtk-config (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kdecoration (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kdeplasma-addons (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kgamma5 (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). khotkeys (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kinfocenter (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kmenuedit (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kpipewire (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kscreen (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. kscreenlocker (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). ksshaskpass (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). ksystemstats (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kwallet-pam (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kwayland-integration (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). kwin (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. kwrited (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). layer-shell-qt (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). libapache-db-perl (0.18-2) unstable; urgency=medium . [ Debian Janitor ] * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Update standards version to 4.6.1, no changes needed. libauthen-tacacsplus-perl (0.28-2) unstable; urgency=medium . [ gregor herrmann ] * Update 'DEB_BUILD_MAINT_OPTIONS = hardening=+bindnow' to '=+all'. . [ Debian Janitor ] * Bump debhelper from old 12 to 13. * Update standards version to 4.5.1, no changes needed. * Update standards version to 4.6.1, no changes needed. libcode-tidyall-plugin-uniquelines-perl (0.000003-2) unstable; urgency=medium . [ gregor herrmann ] * debian/watch: use uscan version 4. . [ Debian Janitor ] * Bump debhelper from old 10 to 12. * Set debhelper-compat version in Build-Depends. * Set upstream metadata fields: Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Remove constraints unnecessary since stretch: + Build-Depends-Indep: Drop versioned constraint on libscalar-list-utils-perl. + libcode-tidyall-plugin-uniquelines-perl: Drop versioned constraint on libscalar-list-utils-perl in Depends. * Bump debhelper from old 12 to 13. * Update standards version to 4.1.5, no changes needed. * Remove constraints unnecessary since buster (oldstable): + Build-Depends-Indep: Drop versioned constraint on perl. + libcode-tidyall-plugin-uniquelines-perl: Drop versioned constraint on perl in Depends. libdata-ieee754-perl (0.02-2) unstable; urgency=medium . [ gregor herrmann ] * debian/copyright: replace tabs with spaces / remove trailing whitespace. * debian/watch: use uscan version 4. . [ Debian Janitor ] * Bump debhelper from old 11 to 12. * Set debhelper-compat version in Build-Depends. * Set upstream metadata fields: Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Update standards version to 4.5.0, no changes needed. * Bump debhelper from old 12 to 13. * Update standards version to 4.5.1, no changes needed. * Update standards version to 4.6.0, no changes needed. * Update standards version to 4.6.1, no changes needed. libfennec-perl (2.018-2) unstable; urgency=medium . [ Xavier Guimard ] * Email change: Xavier Guimard -> yadd@debian.org . [ gregor herrmann ] * debian/watch: use uscan version 4. . [ Debian Janitor ] * Remove constraints unnecessary since stretch: + Build-Depends: Drop versioned constraint on libmodule-build-perl. + Build-Depends-Indep: Drop versioned constraint on libchild-perl. + libfennec-perl: Drop versioned constraint on libchild-perl in Depends. * Bump debhelper from old 12 to 13. * Update standards version to 4.1.5, no changes needed. libkscreen (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). libksysguard (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). libmail-listdetector-perl (1.04+dfsg-2) unstable; urgency=medium . [ Debian Janitor ] * Trim trailing whitespace. * Bump debhelper from old 10 to 12. * Set debhelper-compat version in Build-Depends. . [ gregor herrmann ] * debian/copyright: replace tabs with spaces / remove trailing whitespace. * debian/watch: use uscan version 4. . [ Debian Janitor ] * Bump debhelper from old 12 to 13. * Update standards version to 4.1.5, no changes needed. libpgobject-util-pseudocsv-perl (2-2) unstable; urgency=medium . [ gregor herrmann ] * debian/watch: use uscan version 4. . [ Debian Janitor ] * Bump debhelper from old 10 to 12. * Set debhelper-compat version in Build-Depends. * Set upstream metadata fields: Bug-Submit. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Update standards version to 4.2.1, no changes needed. * Bump debhelper from old 12 to 13. * Apply multi-arch hints. + libpgobject-util-pseudocsv-perl: Add Multi-Arch: foreign. . [ gregor herrmann ] * Update debian/upstream/metadata. Fix GitHub URLs. manuel (1.12.4-2) unstable; urgency=medium . * Handle test output change on python3.11 (Closes: #1024956) mender-client (3.4.0+ds1-3) unstable; urgency=medium . [ Matthias Lüscher ] * Fix the mender client startup. meta-kde (5:135) unstable; urgency=medium . * Bump the minimum Plasma version to 4:5.26.4. milou (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). minetest-mod-advmarkers-csm (0.0~git20220709.a6f6170-2) unstable; urgency=low . * Source only upload for migration to testing minetest-mod-advmarkers-csm (0.0~git20220709.a6f6170-1) unstable; urgency=low . * Initial release. (Closes: #1024545) nbsphinx (0.8.10+ds-1) unstable; urgency=medium . * Team upload. . [ Michael R. Crusoe ] * d/control: append ":any" to python build-dep to facilitate cross- building * d/u/metadata: Removed 'Homepage' and 'watch' redundant fields * Standards-Version: 4.6.0 (routine-update) * d/control: reformat using `cme fix dpkg-control` (routine-update) * Add salsa-ci file (routine-update) * Standards-Version: 4.6.1 (routine-update) * Freshen patches * Added patch to skip codeautolink, as it is not yet packaged for Debian . [ Dmitry Shachnev ] * New upstream release (0.8.10). * Remove examples that use ipywidgets (closes: #1007847). The current version of ipywidgets in Debian is too old. newt (0.52.23-1) unstable; urgency=medium . * New upstream release * Update compiler-warnings.patch * Minor fix to d/rules (define WHIPTCLLIB) because configure changed node-addressparser (1.0.1+repack-4) unstable; urgency=medium . [ Debian Janitor ] * Set upstream metadata fields: Repository-Browse. node-buffers (0.1.1-5) unstable; urgency=medium . [ Debian Janitor ] * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Apply multi-arch hints. + node-buffers: Add Multi-Arch: foreign. . [ Yadd ] * Bump debhelper compatibility level to 13 * Declare compliance with policy 4.5.1 * Use dh-sequence-nodejs . [ Debian Janitor ] * Update standards version to 4.6.0, no changes needed. * Apply multi-arch hints. + node-buffers: Add :any qualifier for nodejs dependency. node-canvas-confetti (1.5.1+~1.4.3-2) unstable; urgency=medium . * Team upload . [ Chris Lamb ] * Make the build reproducible (Closes: #1016584) . [ Yadd ] * Declare compliance with policy 4.6.1 . [ Debian Janitor ] * Apply multi-arch hints. + node-canvas-confetti: Add Multi-Arch: foreign. node-chalk (5.1.2-2) unstable; urgency=medium . * Teap upload * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse * Fix commonjs files node-compression-webpack-plugin (10.0.0-2) unstable; urgency=medium . * Team upload * Fix autopkgtest node-compression-webpack-plugin (10.0.0-1) unstable; urgency=medium . * Team upload . [ Debian Janitor ] * Update standards version to 4.6.0, no changes needed. . [ Yadd ] * Update standards version to 4.6.1, no changes needed. * Fix GitHub tags regex * Fix filenamemangle * Drop dependency to nodejs * New upstream version 10.0.0 * Reduce dependencies to strictly needed * Update test node-decamelize (4.0.0-2) unstable; urgency=medium . [ Debian Janitor ] * Apply multi-arch hints. + node-decamelize: Add Multi-Arch: foreign. * Update standards version to 4.6.1, no changes needed. node-http-proxy (1.18.1-8) unstable; urgency=medium . [ Roland Mas ] * Declare compliance with policy 4.5.0 . [ Debian Janitor ] * Apply multi-arch hints. + node-http-proxy: Add Multi-Arch: foreign. node-is-wsl (2.2.0-3) unstable; urgency=medium . [ Debian Janitor ] * Update standards version to 4.6.1, no changes needed. . [ Yadd ] * Replace /releases by /tags in GitHub urls . [ Debian Janitor ] * Apply multi-arch hints. + node-is-wsl: Add Multi-Arch: foreign. node-less-loader (11.1.0+~2.0.5-4) unstable; urgency=medium . * Increase test timeout for armel (one more time...) node-less-loader (11.1.0+~2.0.5-3) unstable; urgency=medium . * Team upload * Increase test timeout (for armel) node-less-loader (11.1.0+~2.0.5-2) unstable; urgency=medium . * Team upload * Add patch to drop __proto__ calls * Fix autopkgtest * Back to unstable node-less-loader (11.1.0+~2.0.5-1) experimental; urgency=medium . * Team upload * New upstream version 11.1.0+~2.0.5 * Dependencies: + drop node-clone, node-loader-utils, node-pify + add webpack * Enable upstream test (jest) node-less-loader (10.2.0+~2.0.5-2) experimental; urgency=medium . * Team upload * Update standards version to 4.6.1, no changes needed. * Replace /releases by /tags in GitHub urls node-less-loader (10.2.0+~2.0.5-1) experimental; urgency=medium . * Team upload * Embed component klona * New upstream version 10.2.0+~2.0.5 * No more examples * Build klona * Update copyright node-progress (2.0.3-2) unstable; urgency=medium . [ Debian Janitor ] * Apply multi-arch hints. + node-progress: Add Multi-Arch: foreign. * Update standards version to 4.6.0, no changes needed. * Apply multi-arch hints. + node-progress: Add :any qualifier for nodejs dependency. node-stack-trace (0.0.10-3) unstable; urgency=medium . [ Debian Janitor ] * Apply multi-arch hints. + node-stack-trace: Add Multi-Arch: foreign. * Update standards version to 4.6.1, no changes needed. . [ Roland Mas ] * Declare compliance with policy 4.5.0 node-stream-consume (0.1.1-2) unstable; urgency=medium . [ Debian Janitor ] * Update standards version to 4.6.0, no changes needed. * Apply multi-arch hints. + node-stream-consume: Add :any qualifier for nodejs dependency. objgraph (3.5.0-6) unstable; urgency=medium . * Team upload. * d/control: add b-d on pytest to force tests to run via something other than the deprecated "python3 setup.py test" command. * d/tests: run tests with all available python versions. osinfo-db (0.20221130-2) unstable; urgency=medium . * Fix test_ids to work outside the source repository * testsuite autopkgtest: run test_ids again osmnx (1.2.2+ds-2) unstable; urgency=medium . * Debianization: - d/control: - Depends fields, drop python3-descarted dependencies (Closes: #1025044); thanks to Bas Couwenberg for noticing the issue; - Built-Using, python-osmnx-doc Package, discard. otb (8.1.0+dfsg-1) unstable; urgency=medium . * Team upload. * Update symbols for other architectures. * Move from experimental to unstable. otb (8.1.0+dfsg-1~exp1) experimental; urgency=medium . * Team upload. * New upstream release. * Bump Standards-Version to 4.6.1, no changes. * Drop lena files from Files-Excluded, removed upstream. * Drop libopenthreads-dev from (build) dependencies. * Add Rules-Requires-Root to control file. * Update symbols for amd64. * Update lintian overrides. oxygen (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). oxygen-sounds (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). pamela (1.0.0-3) unstable; urgency=medium . [ Debian Janitor ] * Trim trailing whitespace. * Use secure copyright file specification URI. * Bump debhelper from old 12 to 13. * Set debhelper-compat version in Build-Depends. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Update standards version to 4.6.1, no changes needed. papi (7.0.0-2) unstable; urgency=medium . * Upload to unstable. papi (7.0.0-1) experimental; urgency=medium . * New upstream release. (Closes: #1015575) - No longer includes the non-free iozone code. * Refresh patches. * Update debian/copyright. * Bump libpfm4-dev B-D to >= 4.12.1+git6. * Bump SONAME to libpapi.so.7.0. * libsde1: New package for Software Defined Events. * Fix the SONAME of libsde.so.1. * Update symbols for 7.0.0. * Enable the sde component. * Enable the rocm_smi component. * Override source-is-missing sass_source_map.cubin. Source is matmul.cu. * Switch to debhelper-compat (= 13). * Bump Standards-Version to 4.6.1. No changes needed. * Update Lintian overrides. * Upload to experimental. pci.ids (0.0~2022.11.30-1) unstable; urgency=medium . * New upstream release. - Refresh patch. pgrouting (3.4.2-1) unstable; urgency=medium . * Team upload. * New upstream release. * Add Rules-Requires-Root to control file. * Update copyright file. * Drop reproducible builds patches, applied upstream. php-net-sieve (1.4.6-1) unstable; urgency=medium . * New upstream release. * d/watch: Use substitution strings. * Salsa CI: Remove default configuration file. * Update standards version to 4.6.1, no changes needed. * Refresh debian/patches. phpmyadmin-shapefile (2.1-7) unstable; urgency=medium . * Remove Felipe from Uploaders field on d/control * Mark some DEP-8 tests as "Restrictions: superficial" * Fix the package description (#1025367) (Closes: #1025367) * Add new test data files to dh/clean plasma-browser-integration (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. plasma-desktop (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * Fix epoch of recommended xdg-desktop-portal. * Add xdg-desktop-portal-gtk as a Recommends as described in the upstream packaging recommendation. * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. plasma-discover (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-disks (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-firewall (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-integration (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-nano (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-nm (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-pa (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-remotecontrollers (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-sdk (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-systemmonitor (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. plasma-thunderbolt (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-vault (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plasma-workspace (4:5.26.4.1-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4.1). * Update build-deps and deps with the info from cmake. * Refresh patches. * Drop backported upstream fix for a Wayland crasher, it seems to cause shell freezes. plasma-workspace-wallpapers (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). plymouth-kcm (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). polkit-kde-agent-1 (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). powerdevil (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. prometheus-blackbox-exporter (0.23.0-1) unstable; urgency=medium . [ Daniel Swarbrick ] * New upstream release (fixes CVE-2022-46146) * Drop unused build-dep golang-golang-x-text-dev * Bump minimum required golang-github-prometheus-exporter-toolkit-dev to 0.8.2 . [ Guillem Jover ] * Remove --help output from default file pt2-clone (1.53.1+ds-1) unstable; urgency=medium . * New upstream version 1.53.1+ds * Change my email address to snd@debian.org ptyprocess (0.7.0-5) unstable; urgency=medium . * Team upload. * d/control: Build using the generic pyproject pybuild plugin. * d/tests: run tests with all available python versions. pyjunitxml (0.7-2) unstable; urgency=medium . [ Debian Janitor ] * Set field Upstream-Name in debian/copyright. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. * Remove constraints unnecessary since buster (oldstable): + Build-Depends-Indep: Drop versioned constraint on subunit. pystaticconfiguration (0.10.5-2) unstable; urgency=medium . [ Neil Williams ] * Team upload. * Fix dh_python depends (lintian error) * Add d/gbp.conf to handle default debian/master branch * Add Salsa CI * Update standards version . [ Debian Janitor ] * Apply multi-arch hints. + python-staticconf-doc: Add Multi-Arch: foreign. python-anndata (0.8.0-2) unstable; urgency=medium . * Team upload. * d/{control,rules}: migrate from flit to pyproject. * d/t/run-unit-test: test against supported pythons. * d/rules: cleanup test data landing in dist-packages. * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. python-asttokens (2.2.0-1) unstable; urgency=medium . * Team upload. * New upstream release. + Fix compatibility with python3.10. (Closes: #1022445) python-backcall (0.2.0-4) unstable; urgency=medium . * Team upload. * d/control: Build using the pyproject pybuild plugin. * d/tests: run the upstream testsuite as autopkgtests. python-btrees (4.3.1-5) unstable; urgency=medium . [ Debian Janitor ] * Bump debhelper from old 12 to 13. * Update standards version to 4.6.1, no changes needed. python-click-didyoumean (0.3.0-2) unstable; urgency=medium . * Team upload * autopkgtest: Set an dependency on pytest python-click-didyoumean (0.3.0-1) unstable; urgency=medium . * Team upload * d/gbp.conf: Add basic default configuration * d/watch: Switch to version 4 and git mode * New upstream version 0.3.0 * d/control: Update build dependencies * d/control: Set Rules-Requires-Root: no * d/rules: Adjust build system to use pybuild * d/python3-click-didyoumean.examples: Install also examples * d/copyright: Update years data and copyright holder * SalsaCI: Don't run BLC and ANY triggered calls * d/u/metadata: Add fields FAQ and Repository * autopkgtest: Add basic upstreasm test setup python-diaspy (0.6.0-6) unstable; urgency=medium . * QA upload. . [ Debian Janitor ] * QA Upload. Orphan package - see bug 1021902. python-gitdb (4.0.9-2) unstable; urgency=medium . [ Debian Janitor ] * Remove constraints unnecessary since buster (oldstable): + Build-Depends: Drop versioned constraint on python3-smmap. + python3-gitdb: Drop versioned constraint on python3-smmap in Depends. python-gnuplotlib (0.38-2) unstable; urgency=medium . [ Debian Janitor ] * Trim trailing whitespace. * Set upstream metadata fields: Bug-Submit. * Update standards version to 4.5.0, no changes needed. * Bump debhelper from old 12 to 13. * Update standards version to 4.5.1, no changes needed. * Update standards version to 4.6.1, no changes needed. python-hashids (1.3.1-4) unstable; urgency=medium . * Team upload. * d/control: Build using the pyproject pybuild plugin. python-installer (0.5.1+dfsg1-3) unstable; urgency=medium . * Team upload. * d/control: Building using the pyproject pybuild plugin. * d/tests: run tests with all supported python versions. python-num2words (0.5.10-2) unstable; urgency=medium . [ Debian Janitor ] * Bump debhelper from old 12 to 13. * Set upstream metadata fields: Contact. * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). * Update standards version to 4.6.1, no changes needed. python-poppler-qt5 (21.3.0-2) unstable; urgency=medium . [ Debian Janitor ] * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. python-pysam (0.20.0+ds-1) unstable; urgency=medium . * New upstream version * Update lintian override info format in d/python-pysam.lintian-overrides on line 4. * skip_test_remote.patch: refresh. * test-truncated-bam.patch: delete; applied upstream. * d/control: make build only depend on python3-dev. * d/control: disable autopkgtest-pkg-python due to missing python3.11 support; classical autopkgtest is still active though. python-pysam (0.19.1+ds-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.1 (routine-update) * Remove unused license definitions for LGPL-2.1+, BSD-3-clause. . [ Étienne Mollier ] * test-truncated-bam.patch: added; fix test truncated BAM failure. Thanks to John Marshall * d/*.lintian-overrides: refresh mismatches. * d/control: add myself to uploaders. * d/*.lintian-overrides: remove unused overrides. . python-pysam (0.18.0+ds-1~exp2) experimental; urgency=medium . * Bump Build-Depends: libhts-dev (>= 1.14~) Closes: #1001284 . python-pysam (0.18.0+ds-1~exp1) experimental; urgency=medium . * New upstream version * No tab in license text (routine-update) * Update renamed lintian tag names in lintian overrides. * Avoid explicitly specifying -Wl,--as-needed linker flag. * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on bcftools, libhts-dev and samtools. * Drop outdated and unused tests python-pysam (0.18.0+ds-1~exp2) experimental; urgency=medium . * Bump Build-Depends: libhts-dev (>= 1.14~) Closes: #1001284 python-pysam (0.18.0+ds-1~exp1) experimental; urgency=medium . * New upstream version * No tab in license text (routine-update) * Update renamed lintian tag names in lintian overrides. * Avoid explicitly specifying -Wl,--as-needed linker flag. * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on bcftools, libhts-dev and samtools. * Drop outdated and unused tests python-scitrack (2021.5.3-3) unstable; urgency=medium . * d/control: add myself to uploaders. * d/{control,rules}: migrate from flit to generic pyproject. * Update standards version to 4.6.1, no changes needed. * d/rules: cleanup the RECORD file later in the build process. * d/copyright: update copyright year. python-tomli (2.0.1-2) unstable; urgency=medium . * Team upload. * d/control: Build using the pyproject pybuild plugin. pyudev (0.24.0-1) unstable; urgency=medium . * Team upload. . [ Andreas Henriksson ] * New upstream version 0.24.0 * Drop patches that are now part of upstream release * Updating libudev_loading.diff to apply again * Fix lintian warning about python-version-declaration . [ Daniel Andersson ] * Update long package description * Suggests GUI dependencies * Remove obsolete dependency six * Drop mock build-dep * Make Python version match setup.py * Annotate test build-deps q2-dada2 (2022.8.0-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload * i386 is explicitly excluded by Build-Depends: r-bioc-dada2 * Standards-Version: 4.6.1 (routine-update) * Adjust versioned (Build-)Depends . [ Mohammed Bilal ] * New upstream version 2022.8.0 * Refresh patch * Update dependency on qiime/q2-* >= 2022.8.0 . [ Nilesh Patra ] * Depends on r-cran-optparse * Versioned dep on r-bioc-dada2 q2-dada2 (2021.8.0-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Fix watchfile to detect new versions on github * Set versioned Depends to qiime and needed q2-modules . [ Steffen Moeller ] * New upstream version * d/u/metadata: cosmetics * Standards-Version: 4.6.0 (routine-update) q2-dada2 (2020.11.1-3) unstable; urgency=medium . * Team upload. * Depends: python3-biom-format Closes: #980281 * Depends: q2-types, python3-skbio q2-dada2 (2020.11.1-2) unstable; urgency=medium . * Team upload. q2-dada2 (2020.11.1-1) unstable; urgency=medium . * Initial release (Closes: #976863) qbittorrent (4.5.0-2) unstable; urgency=medium . * Add upstream patch to fix crash on exit. * debian/copyright qbittorrent is now GPL-3+ qbittorrent (4.5.0-1) unstable; urgency=medium . * New upstream release. qcoro (0.7.0-3) unstable; urgency=medium . [ Sandro Knauß ] * Upload a new source-only version so it can migrate to testing. qcoro (0.7.0-2) unstable; urgency=medium . [ Sandro Knauß ] * Build QML and QtQuick libs. * Add B-D to run QML and QtQuick tests. * Add new packages for QML and QtQuick. qcoro (0.7.0-1) unstable; urgency=medium . [ Sandro Knauß ] * New upstream release (0.7.0). * Remove upstream applied patches. * Don't build QML and QtQuick libs for the moment. * Update symbols for new version. qcumber (2.3.0-2) unstable; urgency=medium . * Team upload. * Feed debian/config.txt with default Kraken DB directory: - fixes piuparts error due to altered /etc/qcumber/config.txt; - reinforced config and postinst scripts while investigating the issue. * Standards-Version: 4.5.1 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) qcumber (2.3.0-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New usptream version * Remove ancient X-Python-Version field * Point Vcs fields to salsa.debian.org * Depends: snakemake * Add Russian translation of debconf template Closes: #883260 * Add Brazilian Portuguese debconf templates translation Closes: #913936 . [ Steffen Moeller ] * Created debian/upstream/metadata - yet no entries in catalogs. * Update metadata with ref to conda . [ Nilesh Patra ] * Fix dh_perms for executables * Fix description spelling * Fix lintian error for script-not-executable * Drop compat, switch to debhelper-compat * Add "Rules-Requires-Root: no" * Add patch description * Fix html file to use system libs * Bump standards version to 4.5.0 * Fix watch * Add config.txt from past version since debconf seems to rely on a basic config heavily * qcumber.py in now Qcumber-2 * Generate adapters.fa as per build.sh * Fix line break; * Fix lintian * Update upstream/metadata * Rename tags * Add python3 shebang wherever necessary qcumber (1.0.14+dfsg-1) unstable; urgency=medium . * New upstream version * Add nl, fr and po debconf translations (thanks to all translators) Closes: #857950, #858913, #859341 qcumber (1.0.12+dfsg-1) unstable; urgency=medium . * New upstream version * Depends: python3-biopython qcumber (1.0.11+dfsg-1) unstable; urgency=medium . * New upstream version * Depends: r-bioc-savr qcumber (1.0.5+dfsg-2) unstable; urgency=medium . * Check reference file for valid fasta qcumber (1.0.5+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #855211) qmltermwidget (0.2+git20220109.6322802-2) unstable; urgency=medium . * Upload as is source-only. qmltermwidget (0.2+git20220109.6322802-1) unstable; urgency=medium . * Upload to unstable as standalone library (QML module) package. (Closes: #1023522, #991987). See also: #1022953. qqc2-breeze-style (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). quart (0.18.3-2) unstable; urgency=medium . * Team upload * d/control: Update some B-D by adding BuildProfileSpecs * d/u/metadata: Add fields Documentation, Security-Contact quart (0.18.3-1) experimental; urgency=medium . * Team upload . [ Stefano Rivera ] * New upstream release. * Upstream now builds with poetry. . [ Carsten Schoenert ] * d/gbp.conf: Set debian branch to debian/master * New upstream version 0.18.3 (Closes: #1020729) * d/control: Update upstream Homepage URL The upstream project has moved to the umbrella of Pallets and lives now on GitHub. * d/copyright: Update upstream data * d/watch: Update url to watch on * d/control: Increase Standards-Version to 4.6.1 No further modifications needed. * d/control: Adding entry Rules-Requires-Root: no No needs for root privileges while building. * d/control: Increase werkzeug version in Build-Depends The library si depending on werkzeug 2.2+ onwards * d/control: Update entries on python-quart-doc * d/u/metadata: Update entries due upstream project changes Reflect the changes given by the movement of the project home. * d/control: Sort binary packages alphabetical * d/rules: Adjust the target for dh_auto_build * python-quart-doc: Use dh_sphinxdoc for package build * d/rules: Adopt upstream changes into dh_installchangelogs * Lintian: Adding a override about the source * Lintian: Some overrides for python-quart-doc * d/control: Drop obsolete entry X-Python3-Version * d/README.source: Adding base information about source * autopkgtest: Run upstream tests for basic testing r-bioc-affxparser (1.70.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-affxparser (1.68.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-affxparser (1.66.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.66.0 r-bioc-affxparser (1.64.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Permit piuparts failures in CI r-bioc-affxparser (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-affxparser (1.62.0-2) unstable; urgency=medium . * Team upload. * Source-only upload. r-bioc-affxparser (1.62.0-1) unstable; urgency=medium . * Initial release (closes: #975245) r-bioc-affy (1.76.0-1) unstable; urgency=medium . * New upstream version r-bioc-affy (1.74.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-affy (1.72.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.72.0 r-bioc-affy (1.70.0-1) unstable; urgency=medium . [ Andreas Tille ] * Prepare for proper autopkgtest-pkg-r usage . [ Steffen Moeller ] * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * watch file standard 4 (routine-update) * d/u/metadata: Added ref to guix and SciCrunch r-bioc-affy (1.68.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-affy (1.66.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. r-bioc-affy (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-affy (1.62.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Add Testsuite: autopkgtest-pkg-r * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-affy (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-affy (1.58.0-2) unstable; urgency=medium . * Point Vcs-fields to Salsa * Maintainer: Debian R Packages Maintainers r-bioc-affy (1.58.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-affy (1.56.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-affy (1.54.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-affy (1.52.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-affy (1.50.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-affy (1.48.0-1) unstable; urgency=medium . * New upstream version r-bioc-affy (1.46.1-1) unstable; urgency=medium . * New upstream version r-bioc-affy (1.46.0-1) unstable; urgency=medium . * New upstream version r-bioc-affy (1.44.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-copyright r-bioc-affy (1.42.3-1) unstable; urgency=medium . * New upstream version r-bioc-affy (1.42.2-1) unstable; urgency=medium . * New upstream version * Add citation * Add autopkgtest r-bioc-affy (1.38.1-1) unstable; urgency=low . * Initial release (closes: #721806) * Added README.source to document binary files in source tarball which are documented in the according manpages r-bioc-affyio (1.68.0-1) unstable; urgency=medium . * New upstream version r-bioc-affyio (1.66.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-affyio (1.64.0-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * Disable reprotest . [ Nilesh Patra ] * New upstream version 1.64.0 r-bioc-affyio (1.62.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * watch file standard 4 (routine-update) r-bioc-affyio (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-affyio (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-affyio (1.56.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-affyio (1.54.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-affyio (1.52.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-affyio (1.50.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-affyio (1.50.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-affyio (1.48.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Testsuite: autopkgtest-pkg-r r-bioc-affyio (1.46.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-affyio (1.44.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-affyio (1.42.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-affyio (1.40.0-1) unstable; urgency=medium . * New upstream version r-bioc-affyio (1.36.0-1) unstable; urgency=medium . * New upstream version r-bioc-affyio (1.34.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-affyio (1.32.0-1) unstable; urgency=low . * New upstream version * debian/{control,copyright}: Fixed homepage r-bioc-affyio (1.28.0-1) unstable; urgency=low . * Initial release (closes: #720546) r-bioc-all (1.40.0-1) unstable; urgency=medium . * New upstream version r-bioc-all (1.38.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-all (1.36.0-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * Disable reprotest . [ Nilesh Patra ] * New upstream version 1.36.0 r-bioc-all (1.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-all (1.32.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-all (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-all (1.28.0-2) unstable; urgency=medium . * Team upload. * No-change rebuild on the buildds. r-bioc-all (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-altcdfenvs (1:2.60.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-altcdfenvs (1:2.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version 2.58.0 * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-altcdfenvs (1:2.56.0-1) unstable; urgency=medium . * New upstream version r-bioc-altcdfenvs (1:2.54.0-2) unstable; urgency=medium . * Team Upload. * d/t/autopkgtest-pkg-r.conf: Fix the name of test-depends, r-cran-r-unit => r-bioc-runit (Closes: #995206) r-bioc-altcdfenvs (1:2.54.0-1) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure RUnit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on dh-r. r-bioc-altcdfenvs (1:2.52.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-altcdfenvs (1:2.50.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) . [ Andreas Tille ] * Replace tabs from copyright r-bioc-altcdfenvs (1:2.48.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-altcdfenvs (1:2.46.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Team upload. * Add Testsuite: autopkgtest-pkg-r . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-altcdfenvs (1:2.44.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-altcdfenvs (1:2.42.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-altcdfenvs (1:2.42.0-2) unstable; urgency=medium . * Point Vcs-fields to Salsa r-bioc-altcdfenvs (1:2.42.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends * Standards-Version: 4.1.4 r-bioc-altcdfenvs (1:2.40.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-altcdfenvs (1:2.38.0-2) unstable; urgency=medium . * Standards-Version: 4.1.1 * Remove unneeded testsuite header r-bioc-altcdfenvs (1:2.38.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Debhelper 10 * Standards-Version: 4.1.0 * Add README.source to document binary data r-bioc-altcdfenvs (1:2.36.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-altcdfenvs (1:2.34.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-altcdfenvs (1:2.32.0-1) unstable; urgency=medium . * New upstream version r-bioc-altcdfenvs (1:2.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-altcdfenvs (1:2.26.0-2) unstable; urgency=medium . * Previous upload was to unstable by accident. Revert to BioConductor version dependencies which are in Jessie Closes: #774280 r-bioc-altcdfenvs (2.28.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-altcdfenvs (2.26.0-1) unstable; urgency=medium . * New upstream version * Moved debian/upstream to debian/upstream/metadata * Add autopkgtest r-bioc-altcdfenvs (2.24.0-1) unstable; urgency=low . * Initial release (closes: #731162) r-bioc-annotate (1.76.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-annotate (1.74.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.74.0+dfsg * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-annotate (1.72.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-annotate (1.70.0+dfsg-1) unstable; urgency=medium . * Enhance long description * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-annotationdbi and r-bioc-biocgenerics. * Do not run autopkgtest since it required not packaged org.Hs.eg.db package * Disable reprotest r-bioc-annotate (1.68.0+dfsg-1) unstable; urgency=medium . * Remove tabs from d/copyright * New upstream version * debhelper-compat 13 (routine-update) r-bioc-annotate (1.66.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-annotate (1.64.0+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-annotate (1.62.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-annotate (1.60.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-annotate (1.58.0+dfsg-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-annotate (1.58.0+dfsg-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-annotate (1.58.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Architecture: all r-bioc-annotate (1.56.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version. r-bioc-annotate (1.56.1+dfsg-1) unstable; urgency=medium . * Team upload. * Update watch file with secure URI. * New upstream version. * Standards-Version: 4.1.3. * Bump debhelper 11~ r-bioc-annotate (1.56.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-annotate (1.54.0+dfsg-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Testsuite: autopkgtest-pkg-r r-bioc-annotate (1.54.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.0 (no changes needed) r-bioc-annotate (1.52.1+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-annotate (1.52.0+dfsg-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * New Build-Depends: r-cran-rcurl r-bioc-annotate (1.50.0+dfsg-1) unstable; urgency=medium . * New upstream version * Use new uscan options in debian/watch * cme fix dpkg-control r-bioc-annotate (1.48.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-annotate (1.46.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #784873). r-bioc-annotationdbi (1.60.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-annotationdbi (1.58.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-annotationdbi (1.56.2-1) unstable; urgency=medium . * Team upload. * New upstream version 1.56.2 r-bioc-annotationdbi (1.54.1-2) unstable; urgency=medium . * Test-Depends: r-bioc-org.hs.eg.db Despite the fact that r-bioc-org.hs.eg.db is explicitly in Test-Depends the test suite fails -> thus patching out failing tests * Disable reprotest r-bioc-annotationdbi (1.54.1-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * No tab in license text (routine-update) * d/u/metadata: Added refs to registries . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-annotationdbi (1.52.0-1) unstable; urgency=medium . * New upstream version * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-annotationdbi (1.50.3-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-annotationdbi (1.50.1-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-annotationdbi (1.50.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-annotationdbi (1.48.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-annotationdbi (1.46.1-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 r-bioc-annotationdbi (1.46.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Add Testsuite: autopkgtest-pkg-r . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-annotationdbi (1.44.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-annotationdbi (1.42.1-4) unstable; urgency=medium . * Standards-Version: 4.1.5 r-bioc-annotationdbi (1.42.1-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-annotationdbi (1.42.1-2) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends r-bioc-annotationdbi (1.42.1-1) unstable; urgency=medium . * New upstream version r-bioc-annotationdbi (1.42.0-3) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-annotationdbi (1.42.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-annotationdbi (1.42.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-annotationdbi (1.40.0-1) unstable; urgency=medium . * New upstream version r-bioc-annotationdbi (1.38.2-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Add README.source to document binary data files r-bioc-annotationdbi (1.38.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.0 (no changes needed) r-bioc-annotationdbi (1.36.1-2) unstable; urgency=medium . * Add missing Test dependency: r-cran-runit * Remove unused lintian override r-bioc-annotationdbi (1.36.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-annotationdbi (1.36.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * Add minimal autopkgtest based on r-bioc-go.db while ignoring all other tested databases which are not packaged yet r-bioc-annotationdbi (1.34.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-annotationdbi (1.32.0-1) unstable; urgency=medium . * New upstream version * Fixed watch file * lintian override for gzipped file in upstream source r-bioc-annotationdbi (1.30.1-1) unstable; urgency=medium . * New upstream version r-bioc-annotationdbi (1.28.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-annotationdbi (1.26.1-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-annotationdbi (1.26.0-1) unstable; urgency=medium . * New upstream version * Deactivate autopkgtest again since large database packages would be needed and creating these only for the purpose of testing is not very effective Closes: #735547 * New (Build-)Dependency: r-bioc-genomeinfodb r-bioc-annotationdbi (1.24.0-1) unstable; urgency=medium . * New upstream version * Add test suite r-bioc-annotationdbi (1.22.6-1) unstable; urgency=low . * Initial release (closes: #721964) r-bioc-annotationfilter (1.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reorder sequence of d/control fields by cme (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-annotationfilter (1.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.20.0+dfsg * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-annotationfilter (1.18.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-annotationfilter (1.16.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-annotationfilter (1.14.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-annotationfilter (1.12.0+dfsg-1) unstable; urgency=medium . [ Dylan Aïssi ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) . [ Andreas Tille ] * Set upstream metadata fields: Bug-Submit, Repository. r-bioc-annotationfilter (1.10.0+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Repository. * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/ r-bioc-annotationfilter (1.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-annotationfilter (1.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-annotationfilter (1.4.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * Remove autogenerated HTML docs since it is including compressed JS r-bioc-annotationfilter (1.4.0-3) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-annotationfilter (1.4.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-annotationfilter (1.4.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-annotationfilter (1.2.0-1) unstable; urgency=medium . * New upstream version r-bioc-annotationfilter (1.0.0-1) unstable; urgency=medium . * Initial release (closes: #878412) r-bioc-annotationhub (3.6.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-annotationhub (3.4.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 3.4.0+dfsg * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-annotationhub (3.2.2+dfsg-1) unstable; urgency=medium . * New upstream version * Update patch r-bioc-annotationhub (3.2.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-annotationhub (3.2.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-annotationhub (3.0.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-annotationhub (3.0.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-annotationdbi and r-bioc-biocgenerics. * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-annotationhub (2.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-annotationhub (2.20.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-annotationhub (2.20.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-annotationhub (2.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-annotationhub (2.18.0+dfsg-2) unstable; urgency=medium . * Team upload. * Drop useless biocversion.patch and add r-bioc-biocversion to BD. r-bioc-annotationhub (2.18.0+dfsg-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * New upstream version * Standards-Version: 4.4.1 * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g * debian/copyright: Use spaces rather than tabs in continuation lines. . [ Dylan Aïssi ] * Add temporary patch to drop r-bioc-biocversion dependency. r-bioc-annotationhub (2.16.1+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 * Drop test that is requiring remote access r-bioc-annotationhub (2.16.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends r-bioc-annotationhub (2.14.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-annotationhub (2.14.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Add Testsuite: autopkgtest-pkg-r r-bioc-annotationhub (2.14.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Remove trailing whitespace in debian/copyright r-bioc-annotationhub (2.12.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-annotationhub (2.12.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * Remove autogenerated HTML docs since it is including compressed JS r-bioc-annotationhub (2.12.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-annotationhub (2.12.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-annotationhub (2.10.1-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-annotationhub (2.8.2-2) unstable; urgency=medium . * Remove unneeded Testsuite field * Standards-Version: 4.1.1 r-bioc-annotationhub (2.8.2-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.0 (no changes needed) r-bioc-annotationhub (2.8.1-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-annotationhub (2.6.4-1) unstable; urgency=medium . * New upstream version * Add new Build-Depends: r-cran-yaml * debhelper 10 * d/watch: version=4 r-bioc-annotationhub (2.6.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-annotationhub (2.4.2-2) unstable; urgency=medium . * Fix autopkgtest (thanks to Gordon Ball for the patch) r-bioc-annotationhub (2.4.2-1) unstable; urgency=low . * Initial release (closes: #825114) r-bioc-aroma.light (3.28.0-1) unstable; urgency=medium . * New upstream version r-bioc-aroma.light (3.26.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-aroma.light (3.24.0-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * Disable reprotest . [ Nilesh Patra ] * New upstream version 3.24.0 r-bioc-aroma.light (3.22.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-cran-matrixstats, r-cran-r.methodss3, r-cran-r.oo and r-cran-r.utils. r-bioc-aroma.light (3.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-aroma.light (3.18.0-2) unstable; urgency=medium . * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-aroma.light (3.18.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-aroma.light (3.16.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-aroma.light (3.14.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright r-bioc-aroma.light (3.12.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-aroma.light (3.10.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-aroma.light (3.10.0-2) unstable; urgency=medium . * Point Vcs-fields to Salsa * Do not parse d/changelog r-bioc-aroma.light (3.10.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends * Standards-Version: 4.1.4 r-bioc-aroma.light (3.8.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file * Remove unused override r-bioc-aroma.light (3.6.0-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * debhelper 10 * Add lintian-override * Remove reference to remote JavaScript in TypesOfWeights.html since it does not seem to be used to avoid a potential privacy breach r-bioc-aroma.light (3.6.0-1) unstable; urgency=medium . * New upstream version * Refresh remove_test_using_external_functions.patch * Bump versioned Build-Depends: r-cran-matrixstats (>= 0.52.1) r-bioc-aroma.light (3.4.0-1) unstable; urgency=medium . * New upstream version * Generic BioConductor homepage * Switch to dh-r * Versioned Build-Depends: r-cran-r.utils (>= 2.4.0) r-bioc-aroma.light (3.2.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Bump versioned (Build-)Depends: r-cran-matrixstats (>= 0.50.1) r-bioc-aroma.light (3.0.0-2) unstable; urgency=medium . * Autopkgtest would need r-cran-princurve. Add this not yet packaged R package to Suggests and remove those parts from the test suite that are depending from it * cme fix dpkg-control r-bioc-aroma.light (3.0.0-1) unstable; urgency=medium . * New upstream version * Exclude tests requiring external functions r-bioc-aroma.light (2.4.0-1) unstable; urgency=low . * Initial release (closes: #793992) r-bioc-arrayexpress (1.57.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-arrayexpress (1.56.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-arrayexpress (1.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-arrayexpress (1.52.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Trim trailing whitespace. r-bioc-arrayexpress (1.50.0-2) unstable; urgency=medium . * Team upload. * Source-only-upload for testing migration. r-bioc-arrayexpress (1.50.0-1) unstable; urgency=medium . * Initial release (closes: #975340) r-bioc-basilisk.utils (1.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-basilisk.utils (1.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Trim trailing whitespace. r-bioc-basilisk.utils (1.6.0+ds-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.6.0+ds r-bioc-basilisk.utils (1.4.0+ds-2) unstable; urgency=medium . * Team upload. + Source-only upload for testing migration. r-bioc-basilisk.utils (1.4.0+ds-1) unstable; urgency=medium . * Team upload. * Initial release (closes: #991858) r-bioc-beachmat (2.14.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-beachmat (2.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-beachmat (2.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-beachmat (2.8.1+ds-2) unstable; urgency=medium . * Disable reprotest * Test-Depends: r-bioc-hdf5array r-bioc-beachmat (2.8.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-beachmat (2.6.4+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Test-Depends: texlive-latex-base r-bioc-beachmat (2.6.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-beachmat (2.6.1+ds-2) unstable; urgency=medium . * Team upload. * Add g++ to autopkgtests deps r-bioc-beachmat (2.6.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-beachmat (2.6.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Test-Depends: r-bioc-biocparallel, r-cran-devtools r-bioc-beachmat (2.4.0+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Trim trailing whitespace. r-bioc-beachmat (2.4.0+ds-1) unstable; urgency=medium . * Initial release (closes: #962991) r-bioc-biobase (2.58.0-2) unstable; urgency=medium . * Drop debian/gbp.conf * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * lintian-overrides (see lintian bug #1017966) r-bioc-biobase (2.58.0-1) unstable; urgency=medium . * New upstream version r-bioc-biobase (2.56.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-biobase (2.54.0-1) unstable; urgency=medium . * Team Upload. * [90926c6] New upstream version 2.54.0 r-bioc-biobase (2.52.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * watch file standard 4 (routine-update) r-bioc-biobase (2.50.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-biobase (2.48.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-biobase (2.46.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-biobase (2.44.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Add Testsuite: autopkgtest-pkg-r . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-biobase (2.42.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-biobase (2.40.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-biobase (2.40.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-biobase (2.38.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.1 r-bioc-biobase (2.36.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.0.1 (no changes needed) * Document r-data files r-bioc-biobase (2.34.0-1) unstable; urgency=medium . * New upstream version * Canonical BioConductor homepage * Switch to dh-r * hardening=+bindnow r-bioc-biobase (2.32.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-biobase (2.30.0-1) unstable; urgency=medium . * New upstream version * Fixed watch file * Drop outdated paragraph from description r-bioc-biobase (2.28.0-1) unstable; urgency=medium . * New upstream version r-bioc-biobase (2.26.0-1) experimental; urgency=medium . * New upstream source * cme fix dpkg-control r-bioc-biobase (2.24.0-1) unstable; urgency=low . [ Charles Plessy ] * debian/control: removed myself from Uploaders. . [ Andreas Tille ] * New usptream version * Add myself to Uploaders * Remove outdated README.Debian * cme fix dpkg-control * debian/source/format: 3.0 (quilt) * Add autopkgtest (Exclude unit test requiring golubEsets data) r-bioc-biobase (2.20.0-1) unstable; urgency=low . [ Andreas Tille ] 910457e debian/upstream: Added citations . [ Charles Plessy ] 910457e Imported Upstream version 2.20.0 d1f8572 No new copyright nor license notice in the new upstream versions. 4a880aa Using Debhelper 9 6861f53 Conforms with Policy version 3.9.4. 4a49c97 Normalised Debian copyright file with 'cme fix dpkg-copyright'. 4ce8c62 Removed obsolete field DM-Upload-Allowed. 64b2da7 Normalised debian/control with 'cme fix dpkg-control'. c5c1206 Repaired Debian watch file. d8c85b8 Normalised VCS URLs following Lintian's standard. 4a6818a Depend on r-bioc-biocgenerics (>= 0.3.2). r-bioc-biobase (2.14.0-1) unstable; urgency=low [cb6b786] Bioconductor release 2.9. [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION. [ae99e35] Include 7 digits of the commit id in the changelog entry. [33b5d47] Compress binary package with xz. r-bioc-biobase (2.12.2-1) unstable; urgency=low * New upstream release. r-bioc-biobase (2.12.1-1) unstable; urgency=low * Initial release (Closes: #169859) r-bioc-biocbaseutils (1.0.0+dfsg-2) unstable; urgency=medium . * Packaging update * Reorder sequence of d/control fields by cme (routine-update) * Reduce piuparts noise in transitions (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database. r-bioc-biocbaseutils (1.0.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #1024567) r-bioc-bioccheck (1.34.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-bioccheck (1.32.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.32.1+dfsg r-bioc-bioccheck (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-bioccheck (1.30.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-bioccheck (1.28.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * No manual installation of files * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-bioccheck (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Deactivate one more test r-bioc-bioccheck (1.24.0+dfsg-2) unstable; urgency=medium . * Add r-cran-devtools to test-deps * Add patch to ski tests requiring r-cran-RJSONIO (not available in Debian and non-free) * Disable Testsuite: autopkgtest-pkg-r r-bioc-bioccheck (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-bioccheck (1.22.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #958309) r-bioc-biocfilecache (2.6.0+dfsg-2) unstable; urgency=medium . * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-biocfilecache (2.6.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biocfilecache (2.4.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-biocfilecache (2.2.1+dfsg-1) unstable; urgency=medium . * Team Upload. * New upstream version 2.2.1+dfsg r-bioc-biocfilecache (2.2.0+dfsg-1) unstable; urgency=medium . * Team Upload. * New upstream version 2.2.0+dfsg * d/control: Run dh-update-R r-bioc-biocfilecache (2.0.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Add r-cran-filelock to B-D r-bioc-biocfilecache (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocfilecache (1.12.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-biocfilecache (1.12.0+dfsg-1) unstable; urgency=medium . [ Dylan Aïssi ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) . [ Andreas Tille ] * Set upstream metadata fields: Bug-Submit, Repository, Repository- Browse. r-bioc-biocfilecache (1.10.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocfilecache (1.10.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream release * debhelper-compat 12 * Standards-Version: 4.4.0 * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database. * Remove test that needed network access r-bioc-biocfilecache (1.8.0+dfsg-2) unstable; urgency=medium . * Team upload * No-change rebuild on the buildds r-bioc-biocfilecache (1.8.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #931407) r-bioc-biocgenerics (0.44.0-2) unstable; urgency=medium . * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Reduce piuparts noise in transitions (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Mention all available suggested packages as Test-Depends r-bioc-biocgenerics (0.44.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocio (1.8.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biocio (1.6.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-biocio (1.4.0+dfsg-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.4.0+dfsg r-bioc-biocio (1.2.0+dfsg-2) unstable; urgency=medium . * Packaging update * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-biocio (1.2.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #993814) r-bioc-biocneighbors (1.16.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocneighbors (1.14.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Test-Depends: r-cran-codetools r-bioc-biocneighbors (1.12.0+ds-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.12.0+ds r-bioc-biocneighbors (1.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest * Test-Depends: r-cran-rcppannoy r-bioc-biocneighbors (1.8.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocneighbors (1.8.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-biocneighbors (1.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocneighbors (1.6.0+ds-2) unstable; urgency=medium . * Team upload. r-bioc-biocneighbors (1.6.0+ds-1) unstable; urgency=medium . * Initial release (closes: #966550) r-bioc-biocparallel (1.32.3-1) unstable; urgency=medium . * lintian-overrides (See lintian bug #1017966) * Drop debian/tests/control and rely on autopkgtest-pkg-r * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-biocparallel (1.32.1-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-biocparallel (1.30.4-1) unstable; urgency=medium . * New upstream version * Fix lintian-overrides r-bioc-biocparallel (1.30.3-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-biocparallel (1.30.2-2) unstable; urgency=medium . * Team upload. * Re-add r-cran-codetools to Depends (I freaking hate dh-update-R deleting useful entries) r-bioc-biocparallel (1.30.2-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) r-bioc-biocparallel (1.30.0-2) unstable; urgency=medium . * Team upload. * Refresh patches * Add Depends on codetools since code that depends on biocparallel errors out with this package not being there - hence add a Depends r-bioc-biocparallel (1.30.0-1) unstable; urgency=medium . * Fix lintian-override * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Fix lintian-override r-bioc-biocparallel (1.28.3-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.28.2-2) unstable; urgency=medium . * Ignore single test which randomly causes: Error in set.seed(seed) : supplied seed is not a valid integer on random architectures of debci r-bioc-biocparallel (1.28.2-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.28.1-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.26.2-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) . [ Nilesh Patra ] * Add autopkgtests conf file to make smoke tests working r-bioc-biocparallel (1.24.1-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-biocparallel (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocparallel (1.22.0-2) unstable; urgency=medium . * Team upload. * Fix test on ppc64el (Closes: #963111) * debhelper-compat 13 (routine-update) r-bioc-biocparallel (1.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-biocparallel (1.20.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocparallel (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-biocparallel (1.18.1-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Set upstream metadata fields: Contact, Name. r-bioc-biocparallel (1.18.0-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.4.0 * Add patch to disable two failing tests until we found a better solution. (Closes: #914731) r-bioc-biocparallel (1.18.0-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.16.6-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Remove librt-linkage.patch, applied upstream. r-bioc-biocparallel (1.16.5-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocparallel (1.16.4-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-biocparallel (1.16.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Remove boost_1.67.patch, applied upstream. * Fix autopkgtest (Closes: #914731) Remove useless patches: fix_syntax_of_test_script.patch and ignore_test_requiring_rmpi.patch. r-bioc-biocparallel (1.16.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Add patch to fix FTBFS with boost 1.67 (Closes: #914708) Thanks Graham Inggs. * Add Testsuite: autopkgtest-pkg-r r-bioc-biocparallel (1.16.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-biocparallel (1.14.2-2) unstable; urgency=medium . * Test-Depends: r-cran-batchtools Closes: #882371 r-bioc-biocparallel (1.14.2-1) unstable; urgency=medium . * New upstream version * Build-Depends: r-cran-bh instead of libboost-dev * Standards-Version: 4.1.5 r-bioc-biocparallel (1.14.1-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.14.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields * Add comment that libboost-dev is really needed r-bioc-biocparallel (1.14.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Avoid bash syntax error in template script r-bioc-biocparallel (1.12.0-2) unstable; urgency=medium . * pass -lrt option explicitly in src/Makevars (Thanks for the patch to Steve Langasek ) Closes: #889524 * d/watch: Secure URI * cme fix dpkg-control * debhelper 11 r-bioc-biocparallel (1.12.0-1) unstable; urgency=medium . * New upstream version * Use Debian packaged boost library * Architecture: any r-bioc-biocparallel (1.10.1-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Remove unneeded "Testsuite: autopkgtest" * Do not read d/changelog r-bioc-biocparallel (1.10.1-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.8.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-biocparallel (1.8.0-2) unstable; urgency=medium . * Add missing dependency to autopkgtest since this was not in the list of dependencies created by ${R:Depends}: r-cran-batchjobs (>= 1.6) r-bioc-biocparallel (1.8.0-1) unstable; urgency=medium . * New upstream version * Generic BioConductor homepage * Switch to dh-r r-bioc-biocparallel (1.6.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-biocparallel (1.4.3-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Add r-bioc-rsamtools to unit test dependency and Recommends of the package * Exclude requirement of Rmpi from tests since its not packaged yet Closes: #820735 r-bioc-biocparallel (1.4.0-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.2.6-1) unstable; urgency=medium . * New upstream version * Versioned (Build-)Depends r-cran-batchjobs * Suggest: r-cran-mpi r-bioc-biocparallel (1.2.2-1) unstable; urgency=medium . * New upstream version r-bioc-biocparallel (1.0.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-biocparallel (0.6.1-1) unstable; urgency=medium . * Initial release (closes: #753294) r-bioc-biocsingular (1.14.0+ds-2) unstable; urgency=medium . * Team upload. * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-biocsingular (1.14.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-biocsingular (1.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-biocsingular (1.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocsingular (1.8.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-biocsingular (1.6.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocsingular (1.4.0+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-biocsingular (1.4.0+ds-1) unstable; urgency=medium . * Initial release (closes: #966452) r-bioc-biocstyle (2.26.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biocstyle (2.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-biocstyle (2.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-biocstyle (2.20.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-biocstyle (2.18.1+dfsg-3) unstable; urgency=medium . * Team upload * Move texinfo back to Test-Depends * Disable Testsuite: autopkgtest-pkg-r r-bioc-biocstyle (2.18.1+dfsg-2) unstable; urgency=medium . * Team upload * Move texinfo from Test-Depends to Depends to fix autopkgtests r-bioc-biocstyle (2.18.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) * Test-Depends: texlive-plain-generic r-bioc-biocstyle (2.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocstyle (2.16.0+dfsg-2) unstable; urgency=medium . * Source-only upload r-bioc-biocstyle (2.16.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #950781) r-bioc-biocversion (3.16.0-1) unstable; urgency=medium . * New upstream version r-bioc-biocversion (3.15.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-biocversion (3.14.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 3.14.0 r-bioc-biocversion (3.13.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-biocversion (3.12.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-biocversion (3.11.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. r-bioc-biocversion (3.10.1-3) unstable; urgency=medium . * Team upload. * Add temporary patch to fix git_branch field to target the current r-api-bioc-*. r-bioc-biocversion (3.10.1-2) unstable; urgency=medium . * Team upload. * No-change rebuild on the buildds. r-bioc-biocversion (3.10.1-1) unstable; urgency=medium . * Initial release (closes: #944604) r-bioc-biocviews (1.66.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit. * lintian-overrides (see lintian bug #1017966) r-bioc-biocviews (1.64.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocviews (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-biocviews (1.62.1-1) unstable; urgency=medium . * Team upload. * New upstream version 1.62.1 r-bioc-biocviews (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * d/u/metadata: Added refs to registries r-bioc-biocviews (1.58.1-2) unstable; urgency=medium . * Team upload. * Remove test trying to download something from remote r-bioc-biocviews (1.58.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-biocviews (1.58.0-1) unstable; urgency=medium . * New upstream version r-bioc-biocviews (1.56.2-1) unstable; urgency=medium . * New upstream version r-bioc-biocviews (1.56.1-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-biocviews (1.56.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biocviews (1.54.0-2) unstable; urgency=medium . * Rules-Requires-Root: no (routine-update) r-bioc-biocviews (1.54.0-1) unstable; urgency=medium . * Initial release (closes: #958308) r-bioc-biomart (2.54.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-biomart (2.52.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-biomart (2.50.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biomart (2.50.2+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat and mockery will be found r-bioc-biomart (2.50.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biomart (2.50.1+dfsg-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-biomart (2.48.3+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-biomart (2.46.3+dfsg-1~0exp0) experimental; urgency=medium . * Team Upload. * New upstream version 2.46.3+dfsg r-bioc-biomart (2.46.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biomart (2.46.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-biomart (2.46.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biomart (2.44.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biomart (2.44.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-biomart (2.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biomart (2.42.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-biomart (2.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-biomart (2.40.5+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.4.0 r-bioc-biomart (2.40.4+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 r-bioc-biomart (2.40.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.0 r-bioc-biomart (2.40.1+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-biomart (2.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-biomart (2.36.1+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * Remove autogenerated HTML docs since it is including compressed JS r-bioc-biomart (2.36.1-1) unstable; urgency=medium . * New upstream version r-bioc-biomart (2.36.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-biomart (2.36.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-biomart (2.34.2-1) unstable; urgency=medium . * Team upload. * New upstream version. r-bioc-biomart (2.34.1-1) unstable; urgency=medium . * Team upload. * Update watch file with secure URI. * New upstream version. * Standards-Version: 4.1.3. * Add r-cran-httr to Build-Depends. * Bump debhelper 11~. r-bioc-biomart (2.34.0-1) unstable; urgency=medium . * New upstream version * New Build-Depends: r-cran-progress, r-cran-stringr r-bioc-biomart (2.32.1-2) unstable; urgency=medium . * Document why autopkgtest can not be done * Testsuite: autopkgtest-pkg-r * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-biomart (2.32.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-biomart (2.30.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-biomart (2.28.0-1) unstable; urgency=medium . * New upstream version * We can not use autopkgtests since the use of biomart is basically downloading external databases r-bioc-biomart (2.26.1-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * fix autopkgtest r-bioc-biomart (2.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-biomart (2.24.1-1) unstable; urgency=medium . * New upstream version * Fixed watch file r-bioc-biomart (2.24.0-1) unstable; urgency=medium . * New upstream version r-bioc-biomart (2.22.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * Add autopkgtest r-bioc-biomart (2.20.0-1) unstable; urgency=medium . * New upstream version * Moved debian/upstream to debian/upstream/metadata * New (Build-)Depends: r-bioc-annotationdbi r-bioc-biomart (2.18.0-1) unstable; urgency=low . * Initial release (closes: #733278) r-bioc-biomformat (1.26.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-biomformat (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-biomformat (1.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-biomformat (1.20.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Ignore one failing test. To keep on with the BioConductor transition the failure is ignored for the moment but needs to be investigated r-bioc-biomformat (1.18.0+dfsg-2) unstable; urgency=medium . * Team upload. * Don't enable autopkgtests-pkg-r, they lack an important dependency. * Standards-Version: 4.5.0 (routine-update) r-bioc-biomformat (1.18.0+dfsg-1) unstable; urgency=medium . [ Dylan Aïssi ] * Team upload. * New upstream version * debhelper-compat 13 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) r-bioc-biomformat (1.16.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Submit, Repository. r-bioc-biomformat (1.14.0+dfsg-1) unstable; urgency=medium . [ Dylan Aïssi ] * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 . [ Andreas Tille ] * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g * Set upstream metadata fields: Bug-Database, Repository. r-bioc-biomformat (1.12.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * dh-update-R to update Build-Depends r-bioc-biomformat (1.10.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-biomformat (1.10.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-biomformat (1.8.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends * Remove html file containing compressed jquery r-bioc-biomformat (1.8.0-2) unstable; urgency=medium . * Point Vcs-fields to Salsa r-bioc-biomformat (1.8.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends * Standards-Version: 4.1.4 r-bioc-biomformat (1.6.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-biomformat (1.4.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.1 (no changes needed) r-bioc-biomformat (1.2.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * d/watch: version=4 r-bioc-biomformat (1.0.2-1) unstable; urgency=low . * Initial release (closes: #835579) r-bioc-biostrings (2.66.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-biostrings (2.64.1-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-biostrings (2.64.0-1) unstable; urgency=medium . * New upstream version Closes: #1009467 * Reorder sequence of d/control fields by cme (routine-update) * Standards-Version: 4.6.1 (routine-update) r-bioc-biostrings (2.62.0-1) unstable; urgency=medium . * New upstream version r-bioc-biostrings (2.60.2-1) unstable; urgency=medium . [ Steffen Moeller ] * Team upload. * New upstream version * d/u/metadata: Added ref to guix * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure runit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-biostrings (2.58.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-biostrings (2.56.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-biostrings (2.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-biostrings (2.52.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * dh-update-R to update Build-Depends r-bioc-biostrings (2.50.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-biostrings (2.50.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-biostrings (2.48.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-biostrings (2.48.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-biostrings (2.46.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Add README.source to document binary data files r-bioc-biostrings (2.44.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.0 (no changes needed) r-bioc-biostrings (2.44.0-1) unstable; urgency=medium . * Team upload * New upstream version * Bump Build-Depends: r-bioc-xvector (>= 0.16.0) r-bioc-biostrings (2.42.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 * Removed unused lintian override r-bioc-biostrings (2.42.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-biostrings (2.40.2-1) unstable; urgency=medium . * New upstream version * Versioned Build-Depends: r-bioc-s4vectors (>= 0.10.1) r-bioc-biostrings (2.40.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Bumped versioned (Build-)Depends r-bioc-biostrings (2.38.4-1) unstable; urgency=medium . * New upstream version Build-Depends: r-bioc-iranges (>= 2.4.7) * cme fix dpkg-control * Bumped Versioned Build-Depends of r-bioc-xvector Closes: #815429 r-bioc-biostrings (2.38.0-1) unstable; urgency=medium . * New upstream version r-bioc-biostrings (2.36.1-1) unstable; urgency=medium . * New upstream version r-bioc-biostrings (2.34.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-biostrings (2.32.1-1) unstable; urgency=medium . * New upstream version r-bioc-biostrings (2.32.0-1) unstable; urgency=medium . * New upstream version * Patch to use Debian packaged zlib * Versioned (Build-)Depends from r-bioc-xvector * Add autopkgtest r-bioc-biostrings (2.30.1-1) unstable; urgency=low . * New upstream version Closes: #730592 * debian/{control,copyright}: Fixed homepage * Build-Depends: r-bioc-xvector r-bioc-biostrings (2.28.0-1) unstable; urgency=low . * Initial release (closes: #721800). r-bioc-bladderbatch (1.36.0-1) unstable; urgency=medium . * New upstream version r-bioc-bladderbatch (1.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-bladderbatch (1.32.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.32.0 r-bioc-bladderbatch (1.30.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-bladderbatch (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-bladderbatch (1.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-bladderbatch (1.24.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-bladderbatch (1.24.0-1) unstable; urgency=medium . * Initial release (closes: #955736) r-bioc-bluster (1.8.0+dfsg-2) unstable; urgency=medium . * Team upload. * r-bioc-scater 1.26.1 is now available and autopkgtest passing Closes: #1024755 r-bioc-bluster (1.8.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-bluster (1.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-bluster (1.4.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.4.0+dfsg r-bioc-bluster (1.2.1+dfsg-3) unstable; urgency=medium . * Team upload. * r-cran-kohonen is now available r-bioc-bluster (1.2.1+dfsg-2) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Exclude tests requiring not yet packages mbkmeans and kohonen * Test-Depends: r-cran-apcluster r-bioc-bluster (1.2.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-bluster (1.0.0+dfsg-2) unstable; urgency=medium . * Source-only upload. r-bioc-bluster (1.0.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #975439) r-bioc-chemminer (3.50.0+dfsg-1) unstable; urgency=medium . * New upstream version * Update lintian override info format in d/source/lintian-overrides on line 2. r-bioc-chemminer (3.48.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Fix lintian-override r-bioc-chemminer (3.46.0+dfsg-1) unstable; urgency=medium . * Team Upload. * New upstream version 3.46.0+dfsg * d/control: Run dh-update-R r-bioc-chemminer (3.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-chemminer (3.42.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-chemminer (3.42.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-chemminer (3.40.0+dfsg-2) unstable; urgency=medium . * Update patch to skip another test requiring ChemmineOB (Closes: #961001) r-bioc-chemminer (3.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Trim trailing whitespace. r-bioc-chemminer (3.38.0+dfsg-3) unstable; urgency=medium . * Team upload. * Add patch to skip tests requiring packages not yet available in Debian. r-bioc-chemminer (3.38.0+dfsg-2) unstable; urgency=medium . * Source only upload r-bioc-chemminer (3.38.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #955129) r-bioc-complexheatmap (2.14.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-complexheatmap (2.12.1+dfsg-1) unstable; urgency=medium . * New upstream version * Exclude usage of dendsort in testsuite r-bioc-complexheatmap (2.12.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-complexheatmap (2.10.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 2.10.0+dfsg * Run dh-update-R, cme r-bioc-complexheatmap (2.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-complexheatmap (2.6.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-complexheatmap (2.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-complexheatmap (2.4.3+dfsg-2) unstable; urgency=medium . * Testsuite: autopkgtest-pkg-r (routine-update) r-bioc-complexheatmap (2.4.3+dfsg-1) unstable; urgency=medium . * Initial release (closes: #931055) r-bioc-consensusclusterplus (1.62.0-1) unstable; urgency=medium . * New upstream version r-bioc-consensusclusterplus (1.60.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-consensusclusterplus (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.58.0 r-bioc-consensusclusterplus (1.56.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-consensusclusterplus (1.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-consensusclusterplus (1.52.0-1) unstable; urgency=medium . [ Michael R. Crusoe ] * Rules-Requires-Root: no . [ Andreas Tille ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) r-bioc-consensusclusterplus (1.50.0-1) unstable; urgency=medium . * Team upload. * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-consensusclusterplus (1.48.0-1) unstable; urgency=medium . * Initial release (closes: #931067) r-bioc-ctc (1.72.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ctc (1.70.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-ctc (1.68.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.68.0 r-bioc-ctc (1.66.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-ctc (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-ctc (1.62.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Rules-Requires-Root: no (routine-update) r-bioc-ctc (1.60.0-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 * Trim trailing whitespace. r-bioc-ctc (1.60.0-1) unstable; urgency=medium . * Initial release (closes: #949451) r-bioc-dada2 (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) * Remove unused license definitions for GPL-2.0+. r-bioc-dada2 (1.24.0+dfsg-2) unstable; urgency=medium . * Team Upload. * Re-build against rcpp r-bioc-dada2 (1.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-dada2 (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-dada2 (1.20.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * d/u/metadata: - Set upstream metadata fields: Bug-Submit. - Added references to registries r-bioc-dada2 (1.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * d/copyright: pval.c was removed from source r-bioc-dada2 (1.16.0+dfsg-2) unstable; urgency=medium . * Team upload. * Versioned Build-Depends: r-cran-rcppparallel (>= 5.0.2+dfsg-3) Closes: #971115 * Architecture: any-amd64 Closes: #959656 * debhelper-compat 13 (routine-update) r-bioc-dada2 (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Rules-Requires-Root: no (routine-update) r-bioc-dada2 (1.14.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 r-bioc-dada2 (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-dada2 (1.12.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #940061) Second upload fixing the copyright - thanks go to ftpadmin Thorsten for spotting this. r-bioc-decoupler (2.4.0+dfsg-1) unstable; urgency=medium . * Complete list of Test-Depends from suggests * New upstream version r-bioc-decoupler (2.2.2+dfsg-1) unstable; urgency=medium . * New upstream version * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Exclude test requiring r-bioc-omnipath, r-bioc-fgsea, r-bioc-aucell and r-bioc-viper r-bioc-decoupler (2.2.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #1010931) r-bioc-degreport (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) * Set upstream metadata fields: Repository. * lintian-overrides (see lintian bug #1017966) r-bioc-degreport (1.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Repository-Browse. r-bioc-degreport (1.30.3+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-degreport (1.30.3+dfsg-1) unstable; urgency=medium . * New upstream version * Reorder sequence of d/control fields by cme (routine-update) r-bioc-degreport (1.30.0+dfsg-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-degreport (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * No tab in license text (routine-update) r-bioc-degreport (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-degreport (1.24.1+dfsg-2) unstable; urgency=low . * Trim trailing whitespace. * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit. r-bioc-degreport (1.24.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #966349) r-bioc-delayedarray (0.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-delayedarray (0.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-delayedarray (0.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 0.20.0+dfsg r-bioc-delayedarray (0.18.0+dfsg-2) unstable; urgency=medium . * Team upload. * Disable reprotest * Test-Depends: r-bioc-genefilter, r-bioc-biocparallel r-bioc-delayedarray (0.18.0+dfsg-1) unstable; urgency=medium . [ Steffen Moeller ] * Team upload. * Added registry entries to d/u/metadata * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure runit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-delayedarray (0.16.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.16.0+dfsg-2) unstable; urgency=medium . * Team upload. * Run the tests via autopkgtest-pkg-r, not BiocGenerics:::testPackage. Same testsuite, but run in a manner that works. Closes: #979555 * Standards-Version: 4.5.1 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-delayedarray (0.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.14.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-delayedarray (0.14.0+dfsg-2) unstable; urgency=medium . * Add r-bioc-biocparallel to test-deps (Closes: #961350) r-bioc-delayedarray (0.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.12.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-delayedarray (0.12.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.12.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.12.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-delayedarray (0.10.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-delayedarray (0.8.0+dfsg-2) unstable; urgency=medium . * Team upload. * dh-update-R to update Build-Depends Remove useless Build-Depends: libgdal-dev * Add r-bioc-biocparallel (>= 1.16.5) to build-dep to avoid FTBFS on some uncommon architectures. r-bioc-delayedarray (0.8.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Switch Architecture from all to any r-bioc-delayedarray (0.6.6+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-delayedarray (0.6.5+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.6.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.0 r-bioc-delayedarray (0.6.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.6.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.1.5 r-bioc-delayedarray (0.6.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedarray (0.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends * Exclude autogenerated HTML containing compressed JS r-bioc-delayedarray (0.6.0-2) unstable; urgency=medium . * Team upload. * Fix Maintainer and Vcs-fields r-bioc-delayedarray (0.6.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-delayedarray (0.4.1-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-delayedarray (0.2.7-2) unstable; urgency=medium . * Team upload. * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * cme fix dpkg-control r-bioc-delayedarray (0.2.7-1) unstable; urgency=medium . * New upstream version * Update Build-Depends: r-bioc-s4vectors (>= 0.14.3) * Add missing dependency for autopkgtest: r-cran-runit * Add copyright year to debian/copyright r-bioc-delayedarray (0.2.4-1) unstable; urgency=medium . * Initial release (Closes: #863415) r-bioc-delayedmatrixstats (1.20.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedmatrixstats (1.18.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedmatrixstats (1.18.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Fix separator in version number of Matrix r-bioc-delayedmatrixstats (1.18.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-delayedmatrixstats (1.16.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version. * Test-Depends: r-bioc-hdf5array * Disable reprotest * dh-update-R to update Build-Depends (routine-update) r-bioc-delayedmatrixstats (1.14.3+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-s4vectors. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-delayedmatrixstats (1.12.3+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version r-bioc-delayedmatrixstats (1.12.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-delayedmatrixstats (1.12.1+ds-3) unstable; urgency=medium . * Team upload. * patch Description so that the generated binary package also requires r-cran-matrix >= 1.3-2 r-bioc-delayedmatrixstats (1.12.1+ds-2) unstable; urgency=medium . * Team upload. * debian/control: depend on newer r-cran-matrix to fix failing tests. r-bioc-delayedmatrixstats (1.12.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) * debian/tests/control: skip-not-installable r-bioc-delayedmatrixstats (1.12.0+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version . [ Michael R. Crusoe ] * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-delayedmatrixstats (1.10.1+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) r-bioc-delayedmatrixstats (1.10.1+ds-1) unstable; urgency=medium . * Initial release (closes: #966547) r-bioc-deseq (1.39.0-10) unstable; urgency=medium . * Packaging update * Reduce piuparts noise in transitions (routine-update) r-bioc-deseq (1.39.0-9) unstable; urgency=medium . * Team upload. * Really build with bioc API 3.15 (changes in DESCRIPTION files) r-bioc-deseq (1.39.0-8) unstable; urgency=medium . * Rebuild for BioC API 3.15 * Standards-Version: 4.6.1 (routine-update) r-bioc-deseq (1.39.0-7) unstable; urgency=medium . * Team upload. * Build with newer bioc api r-bioc-deseq (1.39.0-6) unstable; urgency=medium . * Packaging update * Standards-Version: 4.6.0 (routine-update) r-bioc-deseq (1.39.0-5) unstable; urgency=medium . [ Andreas Tille ] * Team Upload. * d/watch: Point to fake upstream + Upstream has replaced DESeq by DESeq2. Thus we can not check for new upstream any more. . [ Nilesh Patra ] * d/p/Fix_r-api-bioc.patch: Release for r-api-bioc-3.13 r-bioc-deseq (1.39.0-4) unstable; urgency=medium . * r-api-bioc-3.12 r-bioc-deseq (1.39.0-3) unstable; urgency=medium . * debhelper-compat 13 (routine-update) * DEP3 r-bioc-deseq (1.39.0-2) unstable; urgency=medium . * Add patch to fix r-api-bioc dependency. r-bioc-deseq (1.39.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-deseq (1.38.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-deseq (1.38.0-1) unstable; urgency=medium . * Initial release (closes: #955731) r-bioc-deseq2 (1.38.1+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-deseq2 (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-deseq2 (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-deseq2 (1.32.0+dfsg-3) unstable; urgency=medium . * Disable reprotest * r-bioc-tximeta is now available for tests r-bioc-deseq2 (1.32.0+dfsg-2) unstable; urgency=medium . [ Nilesh Patra ] * d/t/autopkgtest-pkg-r.conf: Add r-bioc-tximportdata Closes: #994443 r-bioc-deseq2 (1.32.0+dfsg-1) unstable; urgency=medium . [ Andreas Tille ] * Team Upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Contact. * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-s4vectors. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-deseq2 (1.30.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Refresh patches r-bioc-deseq2 (1.30.0+dfsg-3) unstable; urgency=medium . * r-bioc-glmgampoi is available now - just enable its usage in tests Closes: #976614 * Standards-Version: 4.5.1 (routine-update) * Test-Depends: r-bioc-tximport r-bioc-deseq2 (1.30.0+dfsg-2) unstable; urgency=medium . * Team upload. * debian/patches/fix_autopkgtest.patch: Skip tests based on glmGamPoi r-bioc-deseq2 (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Inject checking code that makes autopkgtest fail once r-bioc-glmgampoi is available. Once this is the case the test removal should not be done any more r-bioc-deseq2 (1.28.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Add salsa-ci file (routine-update) r-bioc-deseq2 (1.26.0+dfsg-2) unstable; urgency=medium . * Team upload * locfit is in Debian, undoing removal. * d/control: Standards-Version: 4.5.0 * d/control: Rules-Requires-Root: no r-bioc-deseq2 (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-deseq2 (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * dh-update-R to update Build-Depends * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-deseq2 (1.22.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-deseq2 (1.22.1+dfsg-2) unstable; urgency=medium . * Team upload. * Fix autopkgtest. r-bioc-deseq2 (1.22.1+dfsg-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * There is no need to force extra Build-Depends since #900974 was closed . [ Dylan Aïssi ] * New upstream version * Standards-Version: 4.2.1 r-bioc-deseq2 (1.20.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends * Remove autogenerated HTML docs since it is including compressed JS r-bioc-deseq2 (1.20.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields * Add comment about really needed Build-Depends not respected by dh-update-R r-bioc-deseq2 (1.20.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * dh-update-R to update Build-Depends r-bioc-deseq2 (1.18.1-1) unstable; urgency=medium . * Team upload. * New upstream version. * Fix autopkgtest. * Add ref to registries. * Standards-Version: 4.1.3. * Debhelper 11. r-bioc-deseq2 (1.18.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-deseq2 (1.16.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.1 * cme fix dpkg-control r-bioc-deseq2 (1.14.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-deseq2 (1.14.0-1) unstable; urgency=medium . * New upstream version * Add myself to uploaders * Convert to dh-r r-bioc-deseq2 (1.12.4-1) unstable; urgency=medium . * Team upload * New upstream version Closes: #837235 r-bioc-deseq2 (1.12.3-2) unstable; urgency=medium . * Team upload * Fix autopkgtest * Fix Vcs-URL r-bioc-deseq2 (1.12.3-1) unstable; urgency=medium . * Initial release (Closes: #828850) r-bioc-destiny (3.12.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) * lintian-overrides (See lintian bug #1017966) r-bioc-destiny (3.10.0-1) unstable; urgency=medium . * Team upload. * New upstream version 3.10.0 * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-destiny (3.8.1-1) unstable; urgency=medium . * New upstream version r-bioc-destiny (3.8.0-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-destiny (3.8.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-destiny (3.4.0-1) unstable; urgency=medium . * New upstream version r-bioc-destiny (3.2.0-2) unstable; urgency=medium . * debhelper-compat 13 (routine-update) r-bioc-destiny (3.2.0-1) unstable; urgency=medium . * Initial release (closes: #969997) r-bioc-dexseq (1.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-dexseq (1.42.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-dexseq (1.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * Disable reprotest * dh-update-R to update Build-Depends (routine-update) r-bioc-dexseq (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-dexseq (1.36.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dexseq (1.34.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dexseq (1.34.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-dexseq (1.32.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #958967) r-bioc-dir.expiry (1.6.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dir.expiry (1.4.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Trim trailing whitespace. r-bioc-dir.expiry (1.2.0+ds-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.2.0+ds * Bump Standards-Version to 4.6.0 (no changes needed) r-bioc-dir.expiry (1.0.0+ds-2) unstable; urgency=medium . * Team upload. + Source-only upload for testing migration r-bioc-dir.expiry (1.0.0+ds-1) unstable; urgency=medium . * Team upload * Initial release (closes: #991824) r-bioc-dirichletmultinomial (1.40.0-1) unstable; urgency=medium . * New upstream version r-bioc-dirichletmultinomial (1.38.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-dirichletmultinomial (1.36.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.36.0 r-bioc-dirichletmultinomial (1.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-dirichletmultinomial (1.32.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-dirichletmultinomial (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-dirichletmultinomial (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-dirichletmultinomial (1.26.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 r-bioc-dirichletmultinomial (1.24.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-dirichletmultinomial (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-dirichletmultinomial (1.22.0-2) unstable; urgency=medium . * dh-update-R to update Build-Depends r-bioc-dirichletmultinomial (1.22.0-1) unstable; urgency=medium . * Initial release (closes: #899056) r-bioc-dnacopy (1.72.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-dnacopy (1.70.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Set upstream metadata fields: Contact. r-bioc-dnacopy (1.68.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.68.0 r-bioc-dnacopy (1.66.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-dnacopy (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-dnacopy (1.62.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-dnacopy (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-dnacopy (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-dnacopy (1.56.0-1) unstable; urgency=medium . * Team upload. . [ Jelmer Vernooij ] * Use secure URI in Homepage field. . [ Dylan Aïssi ] * New upstream version * Standards-Version: 4.2.1 r-bioc-dnacopy (1.54.0-2) unstable; urgency=medium . * Team upload. * Fix Maintainer and Vcs-fields r-bioc-dnacopy (1.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 r-bioc-dnacopy (1.52.0-1) unstable; urgency=medium . * Team upload * New upstream version * Add registry entry r-bioc-dnacopy (1.50.1-1) unstable; urgency=medium . * Team upload * New upstream version * Secure URI in watch file * debhelper 10 * Standards-Version: 4.1.1 * Add debian/README.source to document binary data files r-bioc-dnacopy (1.48.0-1) unstable; urgency=medium . * Team upload * New upstream version * Convert to dh-r r-bioc-dnacopy (1.46.0-1) unstable; urgency=medium . * Initial release. (Closes: #828189) r-bioc-drimseq (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-drimseq (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-drimseq (1.22.0-2) unstable; urgency=medium . * Team Upload. + Source-only upload for testing migration r-bioc-drimseq (1.22.0-1) unstable; urgency=medium . [routine-update] * New upstream version * Trim trailing whitespace. r-bioc-dropletutils (1.18.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dropletutils (1.18.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-dropletutils (1.16.0+ds-1) unstable; urgency=medium . * Team upload. * Disable reprotest * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-dropletutils (1.14.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dropletutils (1.14.1+ds-1) unstable; urgency=medium . * Team upload. . [ Graham Inggs ] * Exclude test-hashing.R on s390x as well . [ Andreas Tille ] * dh-update-R to update Build-Depends (routine-update) * DEP3 r-bioc-dropletutils (1.12.3+ds-2) unstable; urgency=medium . * Team upload * Exclude test-hashing.R on s390x as well r-bioc-dropletutils (1.12.3+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version . [ Nilesh Patra ] * Add patch to skip failing test r-bioc-dropletutils (1.12.2+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r . [ Nilesh Patra ] * d/control: Add "Testsuite: autopkgtest-pkg-r" r-bioc-dropletutils (1.10.3+ds-2) unstable; urgency=medium . * Team upload. * Ignore failing test on i386, arm64 and ppc64el r-bioc-dropletutils (1.10.3+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dropletutils (1.10.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-dropletutils (1.10.1+ds-1) unstable; urgency=medium . [ Dylan Aïssi ] * Team upload. * New upstream version . [ Michael R. Crusoe ] * debian/control: build-dep on r-bioc-scuttle * Trim trailing whitespace. r-bioc-dropletutils (1.8.0+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) r-bioc-dropletutils (1.8.0+ds-1) unstable; urgency=medium . * Initial release (closes: #969760) r-bioc-dupradar (1.28.0+ds-1) unstable; urgency=medium . * Team upload. * Mark package as not building on i386 for Salsa CI r-bioc-dupradar (1.26.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-dupradar (1.26.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-dupradar (1.24.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version 1.24.0+ds r-bioc-dupradar (1.22.0+ds-2) unstable; urgency=medium . * Team upload. * Add skip-not-installable to autopkgtest-pkg-r.conf * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Disable reprotest r-bioc-dupradar (1.20.0+ds-3) unstable; urgency=high . * Team upload. * Skip Testsuite: autopkgtest-pkg-r since there is currently no way to specify skip-not-installable restriction r-bioc-dupradar (1.20.0+ds-2) unstable; urgency=medium . * Team upload. * Autopkgtest Restrictions: skip-not-installable * Standards-Version: 4.5.1 (routine-update) r-bioc-dupradar (1.20.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-dupradar (1.18.0+ds-2) unstable; urgency=medium . * Team upload. * Test-Depends: r-bioc-dupradar r-bioc-dupradar (1.18.0+ds-1) unstable; urgency=medium . * Initial release (closes: #970097) r-bioc-ebseq (1.38.0-1) unstable; urgency=medium . * New upstream version * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-ebseq (1.36.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * No tab in license text (routine-update) * Set upstream metadata fields: Contact. r-bioc-ebseq (1.34.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.34.0 r-bioc-ebseq (1.32.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. r-bioc-ebseq (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-ebseq (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-ebseq (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-ebseq (1.24.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * rename debian/tests/control.autodep8 to debian/tests/control * fix permissions r-bioc-ebseq (1.22.1-2) unstable; urgency=medium . * Update my email address. * Move debian/tests/control.autodep8 to debian/tests/control. r-bioc-ebseq (1.22.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-ebseq (1.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-ebseq (1.20.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-ebseq (1.20.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-ebseq (1.20.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 r-bioc-ebseq (1.18.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-ebseq (1.16.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.1 * Add debian/README.source to document binary data files r-bioc-ebseq (1.14.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-ebseq (1.12.0-1) unstable; urgency=medium . * New upstream version * Add Vcs fields * cme fix dpkg-control r-bioc-ebseq (1.10.0-1) unstable; urgency=medium . * New upstream version * Fix upstream/metadata syntax * Add autopkgtest r-bioc-ebseq (1.6.0-1) unstable; urgency=low . * Initial release (Closes: #778586) r-bioc-edger (3.40.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edger (3.38.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edger (3.38.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edger (3.38.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edger (3.38.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-edger (3.36.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 3.36.0+dfsg r-bioc-edger (3.34.1+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-edger (3.34.0+dfsg-2) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-limma. * Provide autopkgtest-pkg-r.conf to make sure statmod will be found * Disable reprotest r-bioc-edger (3.32.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-edger (3.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-edger (3.30.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-edger (3.30.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-edger (3.30.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-edger (3.28.1+dfsg-3) unstable; urgency=medium . * Team upload. * Add Testsuite: autopkgtest-pkg-r * Add r-cran-statmod to test-deps r-bioc-edger (3.28.1+dfsg-2) unstable; urgency=medium . * Source only upload r-bioc-edger (3.28.1+dfsg-1) unstable; urgency=medium . * Drop patches to exclude locfit which was just accepted * New upstream version * Fixed debian/watch for BioConductor * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Point Vcs fields to salsa.debian.org (routine-update) * Secure URI in watch file (routine-update) * Do not parse d/changelog (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Name in debian/copyright. * Fix field name typos in debian/copyright. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Remove debian/gbp.conf * Build-Depends: r-cran-locfit r-bioc-edger (3.14.0+dfsg-2) unstable; urgency=medium . * Stick to old version since new upstream versions need non-free locfit * Switch to dh-r * Generic BioConductor homepage * debhelper 10 * d/watch: version=4 * Standards-Version: 4.1.0 (no changes needed) r-bioc-edger (3.14.0+dfsg-1) unstable; urgency=medium . * New upstream version * Use xz option in watch file * cme fix dpkg-control r-bioc-edger (3.12.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edger (3.10.3+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed watch file r-bioc-edger (3.10.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edger (3.8.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edger (3.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * remove tests requiring locfit from the test suite r-bioc-edger (3.6.8+dfsg-1) unstable; urgency=medium . * New upstream version * d/copyright: reviewed r-bioc-edger (3.6.7+dfsg-1) unstable; urgency=medium . * New upstream version * d/rules: Remove now redundant explicite xz compression r-bioc-edger (3.6.2+dfsg-1) unstable; urgency=medium . * New upstream version * debian/rules: add get-orig-source target * debian/rules: fix watch file * versioned (Build-)Depends r-bioc-limma * Enhance autopkgtest r-bioc-edger (3.4.2+dfsg-2) unstable; urgency=medium . [ Martin Pitt ] * debian/tests/control: Re-add @ test dependency which got dropped in the previous upload. * debian/tests/upstream: Run edger tests, not limma (copy&paste error). (Closes: #727695) . [ Andreas Tille ] * Standards-Version: 3.9.5 r-bioc-edger (3.4.2+dfsg-1) unstable; urgency=low . [ Charles Plessy ] 1d47587 Removed myself from Uploaders. . [ Andreas Tille ] * New upstream version * debian/control: - Add Depends: r-cran-statmod to enable running test successfully - Add r-cran-mass to Depends of autopkgtest Closes: #727695 - XS-Testsuite: autopkgtest * debian/README.test: Describe how to run testsuite r-bioc-edger (3.2.4~dfsg-1) unstable; urgency=low . 543a589 Imported Upstream version 3.2.4~dfsg 846128f Normalised VCS URLs. 735a2e9 Signal autopkgtest suite with XS-Testsuite field. a429231 Correct the autopkgtest as the test files are compressed. r-bioc-edger (3.2.3~dfsg-1) unstable; urgency=low . [ Charles Plessy ] 74f1a5f Imported Upstream version 2.6.10~dfsg d2d70ab Corrected VCS URLs. 44c9d4e Regression tests for autopkgtest. . [ Andreas Tille ] * Imported new upstream version 3.2.3~dfsg * debian/control - Added myself as Uploader - Add ${shlibs:Depends} to ensure dependency from libc - Removed DM-Upload-Allowed - Standards-Version: 3.9.4 (no changes needed) - Debhelper 9 - normalised format - Removed unneeded Pre-Depends: dpkg (>= 1.15.6) - Removed versioned dependency of r-base-dev - Package is "Architecture: any" (rather than all) * debian/source/format: Add explicit source format specification * debian/copyright: - Update Source location - s/Removed/Files-Excluded/ to comply with the suggested format that might be processed by uscan as alternative method to filter-pristine-tar - Add years to Copyright field * debian/upstream: inst/CITATION asks for citing this more recent paper that is now on top of debian/upstream * debian/rules: remove executable flag from installed documentation r-bioc-edger (2.6.1~dfsg-1) unstable; urgency=low 43f7a83 Imported Upstream version 2.6.1~dfsg r-bioc-edger (2.6.0~dfsg-1) unstable; urgency=low 732665c Imported Upstream version 2.6.0~dfsg 3f0af26 Summarised the effective license of edgeR once it is loaded in R. r-bioc-edger (2.4.6~dfsg-1) unstable; urgency=low 181300f New upstream version 2.4.6. r-bioc-edger (2.4.3~dfsg-1) unstable; urgency=low 04cc8b8 New upstream 2.4.3. c494484 Renamed debian/upstream-metadata.yaml to debian/upstream. 27bae62 Corrected URLs, paths, and mangles in watch file. d6029fb Provide a more stable URL to the manual. 09acea4 Obtain ${R:Depends} directly throuhg r-base-dev. 5df05c4 Conforms to Policy 3.9.3. 2b01b4a Verbose Debhelper. r-bioc-edger (2.4.0~dfsg-1) unstable; urgency=low [16d49d0] Bioconductor release 2.9. [0e79ff9] Removed User's Guide (no source) in agreement with the upstream authors, see “README.Debian”. r-bioc-edger (2.2.6-1) unstable; urgency=low [c9512e2] New upstream release. [40876f8] Compress binary package with xz. r-bioc-edger (2.2.5-1) unstable; urgency=low * Initial release (Closes: #628882) r-bioc-eir (1.38.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-eir (1.36.0+ds-3) unstable; urgency=medium . * Team upload. * d/t/autopkgtest-pkg-r.conf: Do not run autodep8 tests on i386 either r-bioc-eir (1.36.0+ds-2) unstable; urgency=medium . * Team upload. * Skip running tests on i386 r-bioc-eir (1.36.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-eir (1.34.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version 1.34.0+ds r-bioc-eir (1.32.0+ds-3) unstable; urgency=medium . * Team Upload. * Add patch to fix autopkgtests with i386 r-bioc-eir (1.32.0+ds-2) unstable; urgency=medium . * Team Upload. * Add test-dep on r-cran-rsqlite * d/salsa-ci.yml: Disable reprotest r-bioc-eir (1.32.0+ds-1) unstable; urgency=medium . * Initial release (closes: #995489) r-bioc-experimenthub (2.6.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-experimenthub (2.4.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-experimenthub (2.2.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-experimenthub (2.2.0+ds-1) unstable; urgency=medium . * Team upload. * Disable reprotest * dh-update-R to update Build-Depends (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-annotationhub. r-bioc-experimenthub (2.0.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-annotationhub and r-bioc-biocgenerics. r-bioc-experimenthub (1.16.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-experimenthub (1.14.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-experimenthub (1.14.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) * Trim trailing whitespace. r-bioc-experimenthub (1.14.0+ds-1) unstable; urgency=medium . * Initial release (closes: #966445) r-bioc-fishpond (2.4.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) * lintian-overrides (See lintian bug #1017966) * Drop old autopkgtest files * Drop src/readEDS.cpp from d/copyright r-bioc-fishpond (2.2.0+ds-2) unstable; urgency=medium . * Team upload. * Add test-dep on r-cran-data.table * Add test dep on tximportdata * Do not run tests requiring non-existing data r-bioc-fishpond (2.2.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Upstream has removed test so we do not need to patch it r-bioc-fishpond (2.0.1+ds-2) unstable; urgency=medium . * Team Upload. * Add extra_depends on r-cran-testthat to put up with salsa CI woes, although it would work perfect on debci * r-cran-samr, r-bioc-deseq2 to autopkgtest-r.conf (again for salsa CI) r-bioc-fishpond (2.0.1+ds-1) unstable; urgency=medium . [ Nilesh Patra, Steffen Moeller ] * Initial release (closes: #1001397) r-bioc-fmcsr (1.40.0+dfsg-1) unstable; urgency=medium . * New upstream version * Update lintian override info format in d/source/lintian-overrides on line 2. r-bioc-fmcsr (1.38.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Fix lintian override r-bioc-fmcsr (1.36.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.36.0+dfsg r-bioc-fmcsr (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-fmcsr (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) * Trim trailing whitespace. r-bioc-fmcsr (1.30.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-fmcsr (1.28.0+dfsg-2) unstable; urgency=medium . * Source only upload r-bioc-fmcsr (1.28.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #955288) r-bioc-genefilter (1.80.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-genefilter (1.78.0-1) unstable; urgency=medium . * New upstream version Closes: #1009410 * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-genefilter (1.76.0-1) unstable; urgency=medium . * New upstream version r-bioc-genefilter (1.74.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-genefilter (1.74.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-genefilter (1.72.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-genefilter (1.72.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-genefilter (1.70.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Testsuite: autopkgtest-pkg-r (routine-update) r-bioc-genefilter (1.68.0-2) unstable; urgency=medium . [ Nilesh Patra ] * Team Upload. * Use knitr to weave * Add "Rules-Requires-Root:no" * Bump standards version to 4.5.0 . [ Andreas Tille ] * Add salsa-ci file (routine-update) r-bioc-genefilter (1.68.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * debian/copyright: Use spaces rather than tabs in continuation lines. * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g r-bioc-genefilter (1.66.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-genefilter (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-genefilter (1.62.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-genefilter (1.62.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends * Standards-Version: 4.1.4 r-bioc-genefilter (1.60.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-genefilter (1.58.1-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-genefilter (1.58.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-genefilter (1.56.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-genefilter (1.54.2-1) unstable; urgency=medium . * New upstream version r-bioc-genefilter (1.52.1-1) unstable; urgency=medium . * New upstream version (patch applied upstream) * cme fix dpkg-control * Add r-cran-class to Suggests and autopkgtest Depends r-bioc-genefilter (1.52.0-2) unstable; urgency=medium . * Apply upstream patch to fix conflicting declarations of function gf_distance Closes: #812767 r-bioc-genefilter (1.52.0-1) unstable; urgency=medium . * New upstream version * Add autopkgtest r-bioc-genefilter (1.50.0-1) unstable; urgency=medium . * Initial release (closes: #794279) r-bioc-geneplotter (1.76.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-geneplotter (1.74.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-geneplotter (1.72.0-1) unstable; urgency=medium . * Team upload. * Disable reprotest * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-geneplotter (1.70.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Contact. r-bioc-geneplotter (1.68.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-geneplotter (1.66.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-geneplotter (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g r-bioc-geneplotter (1.62.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-geneplotter (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-geneplotter (1.58.0-3) unstable; urgency=medium . * Team upload. * Rebuild for R 3.5 transition r-bioc-geneplotter (1.58.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-geneplotter (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-geneplotter (1.56.0-1) unstable; urgency=medium . * Team upload * New upstream version * Secure URI in watch file r-bioc-geneplotter (1.54.0-1) unstable; urgency=medium . * Team upload * New upstream version * Add debian/README.source to document binary data files * Standards-Version: 4.1.1 * Add at least "Testsuite: autopkgtest-pkg-r" to run minimum CI test r-bioc-geneplotter (1.52.0-2) unstable; urgency=medium . * Team upload * Do not run autopkgtest which requires large database packages. Add a hint in README.test instead how users might be able to test after installing the databases manually * debhelper 10 * d/watch: version=4 r-bioc-geneplotter (1.52.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Convert to dh-r * cme fix dpkg-control r-bioc-geneplotter (1.50.0-1) unstable; urgency=medium . * Initial release (Closes: #828796) r-bioc-genomeinfodb (1.34.3-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.32.4-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.32.3-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.32.2-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.32.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-genomeinfodb (1.30.1-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-genomeinfodb (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.30.0 r-bioc-genomeinfodb (1.28.4-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-genomeinfodb (1.28.2-1) unstable; urgency=medium . [ Steffen Moeller ] * Team Upload. * New upstream version 1.28.2 * d/u/metadata: completed/updated registry entries * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure runit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-genomeinfodb (1.26.2-2) unstable; urgency=medium . * Drop test trying to download from ftp://ftp.ncbi.nlm.nih.gov/ r-bioc-genomeinfodb (1.26.2-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.26.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) * Autopkgtest restriction: needs-internet r-bioc-genomeinfodb (1.26.0-1) unstable; urgency=medium . * New upstream version * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-genomeinfodb (1.24.2-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-genomeinfodb (1.24.0-1) unstable; urgency=medium . * New upstream version * Update Build-Depends r-bioc-genomeinfodb (1.22.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-genomeinfodb (1.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-genomeinfodb (1.20.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-genomeinfodb (1.18.1-1) unstable; urgency=medium . * Team upload. * New upstream version. * Add Testsuite: autopkgtest-pkg-r. r-bioc-genomeinfodb (1.18.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-genomeinfodb (1.16.0-4) unstable; urgency=medium . * Standards-Version: 4.1.5 r-bioc-genomeinfodb (1.16.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends r-bioc-genomeinfodb (1.16.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-genomeinfodb (1.16.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-genomeinfodb (1.14.0-1) unstable; urgency=medium . * New upstream version * Add registry entry r-bioc-genomeinfodb (1.12.3-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-genomeinfodb (1.12.2-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Add README.source to document binary data file r-bioc-genomeinfodb (1.12.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.0 (no changes needed) r-bioc-genomeinfodb (1.12.0-1) unstable; urgency=medium . * Team upload * New upstream version * Add Build-Depends: r-bioc-genomeinfodbdata r-bioc-genomeinfodb (1.10.3-1) unstable; urgency=medium . * Team upload. * New upstream version - Update URL-s to work with reorganized NCBI data (Closes #859864) * Build-depend on r-cran-rcurl r-bioc-genomeinfodb (1.10.2-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.10.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-genomeinfodb (1.10.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-genomeinfodb (1.8.0-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.6.3-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-genomeinfodb (1.6.0-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.4.3-1) unstable; urgency=medium . * New upstream version * Fix watch file r-bioc-genomeinfodb (1.4.1-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.4.0-1) unstable; urgency=medium . * New upstream version r-bioc-genomeinfodb (1.2.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * add new (Build-)Depends: r-bioc-biocgenerics * test depends from r-bioc-genomicranges r-bioc-genomeinfodb (1.0.2-2) unstable; urgency=medium . * Fix autopkgtest dependencies (Thanks for the patch to Lucas Kanashiro ) Closes: #759415 r-bioc-genomeinfodb (1.0.2-1) unstable; urgency=medium . * Initial release (closes: #750936) r-bioc-genomicalignments (1.34.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-genomicalignments (1.32.1-1) unstable; urgency=medium . * New upstream version r-bioc-genomicalignments (1.32.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-genomicalignments (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.30.0 * d/control: Run dh-update-R r-bioc-genomicalignments (1.28.0-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * d/u/metadata: yamllint and completion * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-genomicalignments (1.26.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-genomicalignments (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-genomicalignments (1.22.1-1) unstable; urgency=medium . * New upstream version r-bioc-genomicalignments (1.22.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-genomicalignments (1.20.1-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright r-bioc-genomicalignments (1.18.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-genomicalignments (1.18.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-genomicalignments (1.16.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-genomicalignments (1.16.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Standards-Version: 4.1.4 r-bioc-genomicalignments (1.14.2-1) unstable; urgency=medium . * New upstream version r-bioc-genomicalignments (1.14.1-1) unstable; urgency=medium . * Team upload. . [ Graham Inggs ] * New Build-Depends: r-bioc-genomicranges (>= 1.29.14) . [ Dylan Aïssi ] * New upstream version. * Debhelper 11. * Standards-Version: 4.1.3. * Add ref to registries. r-bioc-genomicalignments (1.14.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-genomicalignments (1.12.2-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-genomicalignments (1.12.2-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-genomicalignments (1.12.1-1) unstable; urgency=medium . * Team upload * New upstream version * Update Build-Depends: r-bioc-summarizedexperiment (>=1.5.3) r-bioc-genomicalignments (1.10.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-genomicalignments (1.8.0-1) unstable; urgency=medium . * New upstream version r-bioc-genomicalignments (1.6.3-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * According to unit tests: Depends: r-bioc-genomicranges (>= 1.22.4) r-bioc-genomicalignments (1.6.1-1) unstable; urgency=medium . * New upstream version Closes: #803479 * Add new (Build-)Depends: r-bioc-summarizedexperiment r-bioc-genomicalignments (1.4.1-1) unstable; urgency=medium . * New upstream version * Disable patch * Citation * New versioned dependency r-bioc-rsamtools (>= 1.20.4) r-bioc-genomicalignments (1.2.0-1) experimental; urgency=medium . * New upstrem version * cme fix dpkg-control * Adapt to new dependencies r-bioc-genomicalignments (1.0.6-1) unstable; urgency=medium . * New upstream version r-bioc-genomicalignments (1.0.2-1) unstable; urgency=medium . * Initial release (closes: #754154) r-bioc-genomicranges (1.50.1+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-genomicranges (1.48.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-genomicranges (1.46.1+dfsg-1) unstable; urgency=medium . * Disable reprotest * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-genomicranges (1.44.0+dfsg-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * d/u/metadata: - Set upstream fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. (routine-update) - Completed references to registries . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-genomicranges (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-genomicranges (1.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-genomicranges (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-genomicranges (1.36.1+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 r-bioc-genomicranges (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-genomicranges (1.34.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Remove autogenerated HTML docs since it is including compressed JS r-bioc-genomicranges (1.32.7-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-genomicranges (1.32.6-1) unstable; urgency=medium . * New upstream version r-bioc-genomicranges (1.32.4-1) unstable; urgency=medium . * New upstream version r-bioc-genomicranges (1.32.3-2) unstable; urgency=medium . * Standards-Version: 4.1.5 r-bioc-genomicranges (1.32.3-1) unstable; urgency=medium . * New upstream version r-bioc-genomicranges (1.32.2-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends r-bioc-genomicranges (1.32.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-genomicranges (1.32.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-genomicranges (1.30.3-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.3 * debhelper 11 r-bioc-genomicranges (1.30.0-1) unstable; urgency=medium . * New upstream version * Bump versioned Build-Depends: r-bioc-iranges (>= >= 2.11.16) * Secure URI in watch file r-bioc-genomicranges (1.28.6-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-genomicranges (1.28.5-1) unstable; urgency=medium . * New upstream version * Move packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-genomicranges (1.28.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.0 (no changes needed) r-bioc-genomicranges (1.28.2-1) unstable; urgency=medium . * Team upload * New upstream version * Update Build-Depends: r-bioc-genomeinfodb (>= 1.11.5), r-bioc-iranges (>= 2.9.11) r-bioc-genomicranges (1.26.2-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-genomicranges (1.26.1-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-genomicranges (1.24.0-1) unstable; urgency=medium . * New upstream version * Adnjust versioned Build-Depends r-bioc-xvector r-bioc-genomicranges (1.22.4-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * do not skip tests needing r-bioc-summarizedexperiment any more since package is available now * Versioned (Build-)Depends: r-bioc-biocgenerics (>= 0.16.1) r-bioc-genomicranges (1.22.0-1) unstable; urgency=medium . * New upstream version * Skip test requiring extra module SummarizedExperiment r-bioc-genomicranges (1.20.8-1) unstable; urgency=medium . * New upstream version * Fixed watch file r-bioc-genomicranges (1.20.5-1) unstable; urgency=medium . * New upstream version r-bioc-genomicranges (1.20.3-1) unstable; urgency=medium . * New upstream version r-bioc-genomicranges (1.18.1-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * Drop test requiring TxDb.Dmelanogaster.UCSC.dm3.ensGene from test suite r-bioc-genomicranges (1.16.4-2) unstable; urgency=medium . * Add missing r-cran-digest to Recommends + tests/control Closes: #757712 r-bioc-genomicranges (1.16.4-1) unstable; urgency=medium . * New upstream version r-bioc-genomicranges (1.16.3-1) unstable; urgency=medium . * New upstream version * New (Build-)Depends: r-bioc-genomeinfodb * cme fix dpkg-control * add autopkgtest r-bioc-genomicranges (1.14.3-1) unstable; urgency=low . * New upstream version Closes: #730574 * Build-Depends: r-bioc-xvector r-bioc-genomicranges (1.12.4-1) unstable; urgency=low . * Initial release (closes: #721801) * Added README.source to document binary files in source tarball r-bioc-geoquery (2.66.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Set upstream metadata fields: Bug-Database. r-bioc-geoquery (2.64.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-geoquery (2.64.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-geoquery (2.62.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-geoquery (2.62.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 2.62.1+dfsg * d/control: Run dh-update-R r-bioc-geoquery (2.60.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Provide autopkgtest-pkg-r.hook to remove tests downloading large data files * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-geoquery (2.58.0+dfsg-2) unstable; urgency=medium . * Team upload. * Skip flaky test which are loading large amounts of data Closes: #980740 * Standards-Version: 4.5.1 (routine-update) r-bioc-geoquery (2.58.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-geoquery (2.56.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Repository, Repository- Browse. r-bioc-geoquery (2.54.1+dfsg-2) unstable; urgency=medium . * Team upload. r-bioc-geoquery (2.54.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #945919) r-bioc-glmgampoi (1.10.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-glmgampoi (1.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-glmgampoi (1.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.6.0+dfsg r-bioc-glmgampoi (1.4.0+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-glmgampoi (1.2.0+dfsg-6) unstable; urgency=medium . * Add patch to fix tests on i386/i686. Closes: #980223 r-bioc-glmgampoi (1.2.0+dfsg-5) unstable; urgency=medium . * Build for s390x, armel, and mips{64,}el as well, the tests pass there. * debian/tests/autopkgtest-pkg-r.conf: skip some tests if dependencies aren't available (like nodejs on armel). r-bioc-glmgampoi (1.2.0+dfsg-4) unstable; urgency=medium . * debian/tests/autopkgtest-pkg-r.conf: add r-bioc-scran to the test depends r-bioc-glmgampoi (1.2.0+dfsg-3) unstable; urgency=medium . * Restrict architectures to where the tests pass. r-bioc-glmgampoi (1.2.0+dfsg-2) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * Test-Depends: r-bioc-deseq2, r-cran-zoo r-bioc-glmgampoi (1.2.0+dfsg-1) unstable; urgency=medium . [ Andreas Tille ] * Initial release (closes: #974999) r-bioc-go.db (3.16.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-go.db (3.15.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-go.db (3.14.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-go.db (3.13.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-go.db (3.12.1-1) unstable; urgency=medium . * Fix watch file * New upstream version * debhelper-compat 13 (routine-update) * No tab in license text (routine-update) r-bioc-go.db (3.11.4-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-go.db (3.11.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-go.db (3.10.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-go.db (3.8.2-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-go.db (3.7.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-go.db (3.6.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends r-bioc-go.db (3.6.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-go.db (3.6.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends * Standards-Version: 4.1.4 r-bioc-go.db (3.5.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-go.db (3.4.1-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.1 * Testsuite: autopkgtest-pkg-r r-bioc-go.db (3.4.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-go.db (3.3.0-1) unstable; urgency=low . * Initial release (closes: #824805) r-bioc-gosemsim (2.24.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-gosemsim (2.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version 2.22.0 * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-gosemsim (2.20.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-gosemsim (2.18.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-gosemsim (2.16.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gosemsim (2.14.2-1) unstable; urgency=medium . * New upstream version r-bioc-gosemsim (2.14.1-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-gosemsim (2.14.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gosemsim (2.12.1-2) unstable; urgency=medium . * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-gosemsim (2.12.1-1) unstable; urgency=medium . * Initial release (closes: #954867) r-bioc-graph (1.76.0-2) unstable; urgency=medium . * lintian-overrides (see lintian bug #1017966) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-graph (1.76.0-1) unstable; urgency=medium . * New upstream version r-bioc-graph (1.74.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-graph (1.72.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.72.0 * d/control: Run cme * Disable reprotest r-bioc-graph (1.70.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-graph (1.68.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-graph (1.66.0-2) unstable; urgency=medium . * Team Upload. . [ Dylan Aïssi ] * Fix tab-in-license-text . [ Nilesh Patra ] * Fix incompatible unicode (Closes: #961591) * Bump compat version to 13 r-bioc-graph (1.66.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-graph (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-graph (1.62.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-graph (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Remove trailing whitespace in debian/copyright r-bioc-graph (1.58.2-1) unstable; urgency=medium . * New upstream version r-bioc-graph (1.58.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-graph (1.58.0-3) unstable; urgency=medium . * Standards-Version: 4.1.5 r-bioc-graph (1.58.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-graph (1.58.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-graph (1.56.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Add README.source to document binary data files r-bioc-graph (1.54.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.0.1 (no changes needed) * Remove unused lintian override r-bioc-graph (1.52.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-graph (1.50.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-graph (1.48.0-1) unstable; urgency=medium . * New upstream version * Add lintian-override for false positives r-bioc-graph (1.46.0-1) unstable; urgency=medium . * New upstream version r-bioc-graph (1.44.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * debian/copyright: adapt location of glx code r-bioc-graph (1.42.0-1) unstable; urgency=low . * New upstream version * debian/{control,copyright}: Fixed homepage * Add autopkgtest * Recommends: r-cran-xml (since it is used in unit test) r-bioc-graph (1.38.3-1) unstable; urgency=low . * Initial release (closes: #720583) r-bioc-gseabase (1.60.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-gseabase (1.58.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-gseabase (1.56.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gseabase (1.54.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-biocgenerics. * Fix permissions * Fix syntax in d/copyright * Provide autopkgtest-pkg-r.conf to make sure RUnit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Ignore those tests that need not packaged databases r-bioc-gseabase (1.52.1+ds-1) unstable; urgency=medium . * Initial release (closes: #976837) * New upstream version * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Trim trailing whitespace. r-bioc-gsva (1.46.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-gsva (1.44.5+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gsva (1.44.4+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-gsva (1.44.3+ds-3) unstable; urgency=medium . * Team Upload. * Fixed dependency the debian way r-bioc-gsva (1.44.3+ds-2) unstable; urgency=medium . * Team Upload. * Add versioned dep on rmatrix to fix autopkgtests r-bioc-gsva (1.44.3+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gsva (1.44.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gsva (1.44.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gsva (1.44.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-gsva (1.42.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gsva (1.40.1+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. . [ Nilesh Patra ] * d/copyright: Repack html * New upstream version 1.40.1+ds r-bioc-gsva (1.38.2+ds-3) unstable; urgency=medium . * Team Upload. * d/tests/autopkgtest-pkg-r.conf: Add extra_depends on r-cran-runit r-bioc-gsva (1.38.2+ds-2) unstable; urgency=medium . [ Steffen Moeller ] * Added missing build-dependency (Closes: #987469) . [ Nilesh Patra ] * d/test/control: Add depends on r-cran-fastmatch * d/tests/autopkgtest-pkg-r.conf: Add extra depends to fix autodep8 test r-bioc-gsva (1.38.2+ds-1) unstable; urgency=medium . * Initial release (closes: #976840) * New upstream version * debhelper-compat 13 (routine-update) r-bioc-hdf5array (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-hdf5array (1.24.2-1) unstable; urgency=medium . * Team upload * New upload version * Disable reprotest r-bioc-hdf5array (1.24.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-hdf5array (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-hdf5array (1.22.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-hdf5array (1.20.0-2) unstable; urgency=medium . * Team Upload. * d/rules: Remove test_H5ADMatrixSeed-class.R until zellkonverter gets accepted, revert once done r-bioc-hdf5array (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Refresh patches * Add B-D on r-bioc-rhdf5filters r-bioc-hdf5array (1.18.1-3) unstable; urgency=high . * Team upload. * debian/docs: unneeded, removed r-bioc-hdf5array (1.18.1-2) unstable; urgency=medium . * Team upload. * Fix pkg-r-autopkgtest, add missing dependency on r-cran-runit. * Remove debian/tests/run-unit-tests, as that duplicates that now-working pkg-r-autopkgtest r-bioc-hdf5array (1.18.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-hdf5array (1.18.0-2) unstable; urgency=medium . * Team upload. * debian/control:Turn off pkg-r-autopkgtest, the hand written autopkgtests do the same thing but work r-bioc-hdf5array (1.18.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-hdf5array (1.16.1-2) unstable; urgency=medium . * Team upload. r-bioc-hdf5array (1.16.1-1) unstable; urgency=medium . * Initial release (closes: #966553) r-bioc-hilbertvis (1.56.0-1) unstable; urgency=medium . * New upstream version r-bioc-hilbertvis (1.54.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-hilbertvis (1.52.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.52.0 * Disable reprotest r-bioc-hilbertvis (1.50.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Refer to specific version of license GPL-3. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-hilbertvis (1.48.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-hilbertvis (1.46.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-hilbertvis (1.44.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-hilbertvis (1.42.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-hilbertvis (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/changelog r-bioc-hilbertvis (1.38.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-hilbertvis (1.38.0-1) unstable; urgency=medium . [ Steffen Moeller ] * debian/upstream/metadata: - Added references to registries. - yamllint cleanliness . [ Andreas Tille ] * Remove redundant information from debian/upstream/metadata * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 r-bioc-hilbertvis (1.36.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file * Standards-Version: 4.1.1 r-bioc-hilbertvis (1.34.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-hilbertvis (1.32.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * Section: gnu-r r-bioc-hilbertvis (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-hilbertvis (1.28.0-2) unstable; urgency=medium . * Fix autopkgtest * cme fix dpkg-control r-bioc-hilbertvis (1.28.0-1) unstable; urgency=medium . * New upstream version r-bioc-hilbertvis (1.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-hilbertvis (1.24.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * add autopkgtest based on vignettes * Some DEP5 fixes r-bioc-hilbertvis (1.22.0-1) unstable; urgency=medium . * New upstream version * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control r-bioc-hilbertvis (1.18.0-1) unstable; urgency=low . * Team upload. * New upstream release. * Normalised debian/control with cme. * Use Debhelper 9. * Normalised VCS URLs following Lintians standard. * Conforms to Policy 3.9.4. r-bioc-hilbertvis (1.14.0-1) unstable; urgency=low [ Charles Plessy ] * Track stable version (debian/watch). * Corrected VCS URLs (debian/control). [ Andreas Tille ] * New upstream version * debian/watch: Make sure source will be really downloaded r-bioc-hilbertvis (1.13.1-1) unstable; urgency=low * New upstream version * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) * Debhelper 8 (control+compat) * debian/rules: - Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk - Code is trivial enough to remove licensing comment * debian/copyright: Rewritten to match DEP5 and verified using cme fix dpkg-copyright * debian/upstream: Used citation("HilbertVis") to get citation information * mv debian/README.Debian debian/README.test because it is about testing (and install via debian/docs) r-bioc-hilbertvis (1.9.0-1) unstable; urgency=low * New upstream version * debian/copyright: Fix download location * Added watch file * Debhelper 7 * debian/control: - Standards-Version: 3.9.1 (no changes needed) - Depends: ${R:Depends} * debian/rules: - Create substvars file - Fix cut-n-pasto in header information * Source format 3.0 (quilt) * Added README.Debian how this package can be tested r-bioc-hilbertvis (1.5.0-2) unstable; urgency=low * Fixing missing dependency on lattice. (Closes: #557031) r-bioc-hilbertvis (1.5.0-1) unstable; urgency=low * Initial release (Closes: #555921). r-bioc-hsmmsinglecell (1.18.0-1) unstable; urgency=medium . * New upstream version r-bioc-hsmmsinglecell (1.16.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-hsmmsinglecell (1.14.0-1) unstable; urgency=medium . * New upstream version r-bioc-hsmmsinglecell (1.12.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-hsmmsinglecell (1.10.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-hsmmsinglecell (1.8.0-2) unstable; urgency=medium . * debhelper-compat 13 (routine-update) * Trim trailing whitespace. r-bioc-hsmmsinglecell (1.8.0-1) unstable; urgency=medium . * Initial release (closes: #970073) r-bioc-htsfilter (1.38.0+dfsg-2) unstable; urgency=medium . * Team upload. * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-htsfilter (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-htsfilter (1.36.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-htsfilter (1.34.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-htsfilter (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-htsfilter (1.30.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) * Remove autogenerated HTML docs since it is including compressed JS r-bioc-htsfilter (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-htsfilter (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-htsfilter (1.26.0-2) unstable; urgency=medium . * Team upload. * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. r-bioc-htsfilter (1.26.0-1) unstable; urgency=medium . * Initial release (closes: #958560) r-bioc-hypergraph (1.70.0-1) unstable; urgency=medium . * New upstream version r-bioc-hypergraph (1.68.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-hypergraph (1.66.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.66.0 r-bioc-hypergraph (1.64.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * watch file standard 4 (routine-update) * Provide autopkgtest-pkg-r.conf to make sure runit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-hypergraph (1.62.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. r-bioc-hypergraph (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-hypergraph (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-hypergraph (1.56.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-hypergraph (1.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-hypergraph (1.52.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-hypergraph (1.52.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-hypergraph (1.52.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-hypergraph (1.50.0-1) unstable; urgency=medium . * New upstream version r-bioc-hypergraph (1.48.0-2) unstable; urgency=medium . * Move packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-hypergraph (1.48.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-hypergraph (1.46.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-hypergraph (1.44.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-hypergraph (1.42.0-1) unstable; urgency=medium . * New upstream version r-bioc-hypergraph (1.40.0-1) unstable; urgency=medium . * New upstream version * Fix test suite r-bioc-hypergraph (1.38.1-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * Add autopkgtest r-bioc-hypergraph (1.36.0-1) unstable; urgency=low . * New upstream version * Install README.test * cme fix dpkg-control r-bioc-hypergraph (1.32.0-1) unstable; urgency=low . * Initial release (closes: #724859) r-bioc-ihw (1.26.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-ihw (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-ihw (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.22.0+dfsg r-bioc-ihw (1.20.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-ihw (1.18.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-ihw (1.16.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-ihw (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ihw (1.12.0+dfsg-2) unstable; urgency=medium . * Team upload. * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-ihw (1.12.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #931599) r-bioc-impute (1.72.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-impute (1.70.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-impute (1.68.0-1) unstable; urgency=medium . * Team upload. * New upstream version. * Disable reprotest r-bioc-impute (1.66.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-impute (1.64.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-impute (1.62.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-impute (1.60.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-impute (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-impute (1.56.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-impute (1.54.0-3) unstable; urgency=medium . [ Andreas Tille ] * Team upload. . [ Dylan Aïssi ] * Update Maintainer to Debian R team r-bioc-impute (1.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.1.4 r-bioc-impute (1.52.0-1) unstable; urgency=medium . * Initial release (Closes: #891808) r-bioc-interactivedisplaybase (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-interactivedisplaybase (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-interactivedisplaybase (1.32.0+dfsg-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-interactivedisplaybase (1.30.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Added d/u/metadata * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * No tab in license text (routine-update) r-bioc-interactivedisplaybase (1.28.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-interactivedisplaybase (1.26.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-interactivedisplaybase (1.26.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-interactivedisplaybase (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-interactivedisplaybase (1.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-interactivedisplaybase (1.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-interactivedisplaybase (1.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-interactivedisplaybase (1.18.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * Remove autogenerated HTML docs since it is including compressed JS r-bioc-interactivedisplaybase (1.18.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-interactivedisplaybase (1.18.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-interactivedisplaybase (1.16.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-interactivedisplaybase (1.14.0-1) unstable; urgency=medium . * New upstream version * Move packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.1 * Add "Testsuite: autopkgtest-pkg-r" r-bioc-interactivedisplaybase (1.12.0-1) unstable; urgency=medium . * New upstream version (bump versioned Build-Depends) * Convert to dh-r * Generic BioConductor homepage r-bioc-interactivedisplaybase (1.10.2-1) unstable; urgency=low . * Initial release (closes: #824448) r-bioc-ioniser (2.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-ioniser (2.20.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-ioniser (2.18.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Add marker to not delete the needed Build-Depends r-bioc-ioniser (2.16.0+dfsg-2) unstable; urgency=medium . * Team Upload. * d/t/autopkgtest-pkg-r.hook: hook to remove tests depending on miniondatasummary since this is not packaged (Closes: #995199) r-bioc-ioniser (2.16.0+dfsg-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) . [ Nilesh Patra ] * d/control: Remove myself from uploaders, add Andreas instead * Re-add needed B-D: Reverts routine-update: dh-update-R to update Build-Depends (3) r-bioc-ioniser (2.14.0+dfsg-2) unstable; urgency=medium . * Fix copyright year r-bioc-ioniser (2.14.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #986170) r-bioc-iranges (2.32.0-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.30.1-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.30.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-iranges (2.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version 2.28.0 * d/control: Run dh-update-R r-bioc-iranges (2.26.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Provide autopkgtest-pkg-r.conf to make sure runit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-iranges (2.24.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-iranges (2.24.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-iranges (2.22.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Testsuite: autopkgtest-pkg-r (routine-update) r-bioc-iranges (2.22.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Rules-Requires-Root: no (routine-update) * Remove tabs from debian/copyright. r-bioc-iranges (2.20.2-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-iranges (2.20.1-2) unstable; urgency=medium . * Team upload . [ Dylan Aïssi ] * Add salsa-ci.yml * Update autopkgtests r-bioc-iranges (2.20.1-1) unstable; urgency=medium . * Team upload. * New upstream version * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-iranges (2.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-iranges (2.18.3-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.18.2-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 r-bioc-iranges (2.18.1-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-iranges (2.16.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Remove trailing whitespace in debian/copyright r-bioc-iranges (2.14.12-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.14.11-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-iranges (2.14.10-2) unstable; urgency=medium . * Standards-Version: 4.1.5 r-bioc-iranges (2.14.10-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends r-bioc-iranges (2.14.8-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.14.7-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.14.4-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.14.1-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-iranges (2.14.1-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends r-bioc-iranges (2.14.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-iranges (2.12.0-2) unstable; urgency=medium . * Do not symlink non-existing doc Closes: #855625 * Standards-Version: 4.1.2 r-bioc-iranges (2.12.0-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.10.5-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Build-Depends: r-bioc-biocgenerics (>= 0.22.1) * Remove unnecessary testsuite autopkgtest-header r-bioc-iranges (2.10.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.0 r-bioc-iranges (2.10.1-1) unstable; urgency=medium . * Team upload * New upstream version * Bump versioned Build-Depends: r-bioc-s4vectors (>= 0.14.0) r-bioc-iranges (2.8.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-iranges (2.8.0-1) unstable; urgency=medium . * New upstream version (bump versioned Build-Depends) * Convert to dh-r * Generic BioConductor homepage r-bioc-iranges (2.6.1-1) unstable; urgency=medium . * New upstream version * Versioned (Build-)Depends r-bioc-s4vectors r-bioc-iranges (2.6.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-iranges (2.4.7-1) unstable; urgency=medium . * New upstream version * Fix versioned depends * cme fix dpkg-control r-bioc-iranges (2.4.1-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.2.7-1) unstable; urgency=medium . * New upstream version * Fixed watch file * versioned Depends on r-bioc-s4vectors r-bioc-iranges (2.2.5-1) unstable; urgency=medium . * New upstream version * Requires S4Vectors (>= 0.6.1) r-bioc-iranges (2.2.4-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.2.1-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (2.0.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * New (Build-)Depends: r-bioc-s4vectors r-bioc-iranges (1.22.10-1) unstable; urgency=medium . * New upstream version r-bioc-iranges (1.22.8-1) unstable; urgency=medium . * New upstream version * Bump versioned (Build-)Depends from r-bioc-biocgenerics to >= 0.9.1 r-bioc-iranges (1.20.6-2) unstable; urgency=medium . [ Martin Pitt ] * debian/tests/control: Add missing r-cran-runit and r-bioc-xvector test dependencies, and allow stderr output. Closes: #735546 . [ Andreas Tille ] * Standards-Version: 3.9.5 r-bioc-iranges (1.20.6-1) unstable; urgency=low . * New upstream version * debian/README.test: More detailed testing suggested * debian/tests: Add unit test r-bioc-iranges (1.20.4-1) unstable; urgency=low . * New upstream version * debian/{control/copyright}: Fixed homepage * debian/control: Versioned (Build-)Depends r-bioc-iranges (1.18.3-1) unstable; urgency=low . * Initial release (closes: #720537) r-bioc-keggrest (1.38.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-keggrest (1.36.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-keggrest (1.36.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-keggrest (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-keggrest (1.34.0+dfsg-1) unstable; urgency=medium . * Disable reprotest * New upstream version * Fix permissions r-bioc-keggrest (1.32.0+dfsg-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Created d/u/metadata . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-keggrest (1.30.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-keggrest (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-keggrest (1.28.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-keggrest (1.26.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-keggrest (1.24.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-keggrest (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-keggrest (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-keggrest (1.20.2+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-keggrest (1.20.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-keggrest (1.20.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * Drop shlibs:Depends * Remove autogenerated HTML docs since it is including compressed JS r-bioc-keggrest (1.20.0-1) unstable; urgency=medium . * Initial release (closes: #899053) r-bioc-limma (3.54.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.52.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.52.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.52.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.52.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.52.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-limma (3.50.1+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-limma (3.50.1+dfsg-1) unstable; urgency=medium . * New upstream version * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-limma (3.50.0+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Contact. * Remove useless debian/source/include-binaries r-bioc-limma (3.48.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-limma (3.46.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-limma (3.44.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-limma (3.44.2+dfsg-2) unstable; urgency=medium . * Added locfit as a build dependency. * Added myself as uploader. r-bioc-limma (3.44.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-limma (3.44.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Rules-Requires-Root: no (routine-update) r-bioc-limma (3.42.2+dfsg-2) unstable; urgency=medium . * Team upload. * Add r-bioc-org.hs.eg.db to test-deps r-bioc-limma (3.42.2+dfsg-1) unstable; urgency=medium . * Team upload. . [ Steffen Moeller ] * r-bioc-go.db is now in the distribution, deactivated patch that circumvented testing against it. * Added a bit to the description. . [ Dylan Aïssi ] * New upstream version r-bioc-limma (3.42.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Set field Upstream-Name in debian/copyright. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-limma (3.42.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * Standards-Version: 4.4.1 r-bioc-limma (3.40.6+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 r-bioc-limma (3.40.2+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-limma (3.38.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Add Testsuite: autopkgtest-pkg-r r-bioc-limma (3.38.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Refresh patches r-bioc-limma (3.36.5+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.36.3+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-limma (3.36.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.36.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.36.0+dfsg-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-limma (3.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends * Standards-Version: 4.1.4 r-bioc-limma (3.34.9+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.3 * debhelper 11 * d/rules: do not parse d/changelog r-bioc-limma (3.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Add registry entry r-bioc-limma (3.32.10+dfsg-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file * Standards-Version: 4.1.1 r-bioc-limma (3.32.7+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Bumped policy to 4.1.0 (no changes required) r-bioc-limma (3.30.8+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.30.7+dfsg-2) unstable; urgency=medium . * Add missing test depends: r-cran-statmod r-bioc-limma (3.30.7+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.30.6+dfsg-1) unstable; urgency=medium . [ Kevin Murray ] * New upstream version 3.30.6 * Add myself to uploaders . [ Andreas Tille ] * debhelper 10 * d/watch: version=4 r-bioc-limma (3.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * Generic BioConductor homepage * Switch to dh-r r-bioc-limma (3.28.17+dfsg-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-limma (3.28.10+dfsg-1) unstable; urgency=medium . * Team upload * New upstream version * Fix the run-unit-test script (don't check for exact stdout match) and add a missing test dependency (r-cran-mass) r-bioc-limma (3.28.4+dfsg-1) unstable; urgency=medium . * New upstream version * Use xz compression per d/watch file * cme fix dpkg-control r-bioc-limma (3.26.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.24.15+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed watch file r-bioc-limma (3.24.14+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.24.13+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.22.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-limma (3.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Skip test needing GO.db which is not yet packaged r-bioc-limma (3.20.9+dfsg-1) unstable; urgency=medium . * New upstream version (adapted patch) * d/copyright: Updated copyright information r-bioc-limma (3.20.7+dfsg-1) unstable; urgency=low . [ Charles Plessy ] bff8c59 debian/control: removed myself from Uploaders. c3b46aa Imported Upstream version 3.18.10~dfsg . [ Andreas Tille ] * New upstream version * Depends: r-cran-statmod Closes: #727693 * Complies with Standards-Version: 3.9.5 * d/copyright: check new version * d/control: Testsuite: autopkgtest r-bioc-limma (3.16.7~dfsg-1) unstable; urgency=low . be4e6a5 Imported Upstream version 3.16.7~dfsg 5d10f8d Normalised VCS URLs. 3ed3572 Signal the presence of autopkgtest suite with a XS-Testsuite field. r-bioc-limma (3.16.3~dfsg-1) unstable; urgency=low . [ Charles Plessy ] ff8c6db Imported Upstream version 3.12.1~dfsg b4f097e Effective license is GPL-2, without the '+', as R is GPL-2. . [ Andreas Tille ] * Imported new upstream version 3.16.3~dfsg * debian/control - added myself to Uploaders - Removed DM-Upload-Allowed - Standards-Version: 3.9.4 (no changes needed) - Debhelper 9 - Fake normalisation as it is done by `cme fix dpkg-control` (the command did actually no change - the control file was brought into shape manually) - Removed versioned dependency of r-base-dev * debian/copyright: - s/Removed/Files-Excluded/ to comply with the suggested format that might be processed by uscan as alternative method to filter-pristine-tar - checked new upstream version and bumped version number - Add years to Copyright fields * debian/rules: Remove executable flag from doc files * debian/source/format: Add explicit source format specification r-bioc-limma (3.12.0~dfsg-1) unstable; urgency=low [ Charles Plessy ] 2d3420e Imported Upstream version 3.12.0~dfsg 4bbb8e4 Document LIMMA's copyright as a whole. [ Andreas Tille ] 8a61a4c Obtain references from inst/CITATION r-bioc-limma (3.10.3-1) unstable; urgency=low 0ddb00d New Upstream version. [ Carlos Borroto ] afe6f31 Fix for watch file. [ Charles Plessy ] 7ef2264 Removing inst/doc/usersguide.pdf, as its source is missing. 4713d97 Obtain ${R:Depends} through r-base-dev. 756a1da Conforms to Policy 3.9.3. 68495e3 Renamed debian/upstream-metadata.yaml to debian/upstream. 2db0d3d Verbose Debhelper. r-bioc-limma (3.10.0-1) unstable; urgency=low [eebb062] New upstream release (Bioconductor 2.9). [c1a8767] Include 7 digits of the commit ID in the changelog entry. r-bioc-limma (3.8.3-1) unstable; urgency=low * New upstream release. * [e891bb6b] Corrected VCS-Git url. r-bioc-limma (3.8.2-1) unstable; urgency=low * Initial release (closes: #628548). r-bioc-lpsymphony (1.26.0+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Repository-Browse. r-bioc-lpsymphony (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-lpsymphony (1.22.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-lpsymphony (1.20.0+dfsg-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * Added d/u/metadata and d/README.source * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Archive, Bug-Database, Bug-Submit. . [ Andreas Tille ] * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-lpsymphony (1.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-lpsymphony (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-lpsymphony (1.14.0+dfsg-2) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-lpsymphony (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-lpsymphony (1.12.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #931494) r-bioc-makecdfenv (1.74.0-1) unstable; urgency=medium . * New upstream version r-bioc-makecdfenv (1.72.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-makecdfenv (1.70.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-makecdfenv (1.68.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * No tab in license text (routine-update) r-bioc-makecdfenv (1.66.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. r-bioc-makecdfenv (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-makecdfenv (1.62.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-makecdfenv (1.60.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright r-bioc-makecdfenv (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-makecdfenv (1.56.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-makecdfenv (1.56.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-makecdfenv (1.54.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-makecdfenv (1.52.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.1 (no changes needed) * Build-Depends: zlib1g-dev * Moved packaging from SVN to Git * Fix strange build problem by removing configure file * Remove unused lintian override r-bioc-makecdfenv (1.50.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-makecdfenv (1.48.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-makecdfenv (1.46.0-1) unstable; urgency=medium . * New upstream version * lintian override for false positive r-bioc-makecdfenv (1.44.0-1) unstable; urgency=medium . * New upstream version r-bioc-makecdfenv (1.42.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * Add autopkgtest r-bioc-makecdfenv (1.40.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-makecdfenv (1.36.0-1) unstable; urgency=low . * Initial release (closes: #728273) r-bioc-matrixgenerics (1.10.0-1) unstable; urgency=medium . * New upstream version r-bioc-matrixgenerics (1.8.1-1) unstable; urgency=medium . * New upstream version r-bioc-matrixgenerics (1.8.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-matrixgenerics (1.6.0-1) unstable; urgency=medium . * New upstream version r-bioc-matrixgenerics (1.4.3-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-matrixgenerics (1.2.1-4) unstable; urgency=high . * Team upload. * Bump r-cran-matrixstats dependency to (>= 0.58.0). Closes: #982621 r-bioc-matrixgenerics (1.2.1-3) unstable; urgency=high . * Team upload. * debian/control: also add tighter r-cran-matrixstats dependency to the binary package r-bioc-matrixgenerics (1.2.1-2) unstable; urgency=high . * Team upload. * debian/control: r-cran-matrixstats 0.57.0 is insufficient r-bioc-matrixgenerics (1.2.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-matrixgenerics (1.2.0-2) unstable; urgency=medium . * debhelper-compat 13 (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-matrixgenerics (1.2.0-1) unstable; urgency=medium . * Initial release (closes: #973602) r-bioc-megadepth (1.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-megadepth (1.6.0+ds-3) unstable; urgency=medium . * Team upload. * Do not run tests on s390x as megadepth does not work there r-bioc-megadepth (1.6.0+ds-2) unstable; urgency=medium . * Team upload. * Add Depends on megadepth * Add patch to not force megadepth installation in tests r-bioc-megadepth (1.6.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-megadepth (1.4.0+ds-2) unstable; urgency=medium . * Team upload. * Source-only upload * Reorder sequence of d/control fields by cme (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. r-bioc-megadepth (1.4.0+ds-1) unstable; urgency=medium . * Team upload. * Initial release (closes: #1008737) r-bioc-mergeomics (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-mergeomics (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-mergeomics (1.22.0-1) unstable; urgency=medium . * Team upload. * Disable reprotest r-bioc-mergeomics (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Provide autopkgtest-pkg-r.conf to make sure RUnit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-mergeomics (1.18.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-mergeomics (1.16.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-mergeomics (1.14.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-mergeomics (1.12.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-mergeomics (1.10.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-mergeomics (1.8.0-3) unstable; urgency=medium . * Team upload. * Rebuild for R 3.5 transition r-bioc-mergeomics (1.8.0-2) unstable; urgency=medium . * Team upload. * Fix Maintainer and Vcs-fields r-bioc-mergeomics (1.8.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 r-bioc-mergeomics (1.6.0-1) unstable; urgency=medium . * New upstream release. * Update references to registries. * Canonical Vcs-Browser. * Bump Standards-Version: 4.1.1 (no changes needed). r-bioc-mergeomics (1.4.0-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.1.0 * cme fix dpkg-control r-bioc-mergeomics (1.4.0-1) unstable; urgency=medium . * New upstream release. * Add OMICtools ref. * Bump debhelper compat 10. * Bump Standards-Version: 4.0.0 (no changes needed). r-bioc-mergeomics (1.2.0-1) unstable; urgency=medium . * Initial release (Closes: #844772) r-bioc-metagenomeseq (1.40.0-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-metagenomeseq (1.38.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-metagenomeseq (1.36.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.36.0 r-bioc-metagenomeseq (1.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * No tab in license text (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-metagenomeseq (1.32.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-metagenomeseq (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-metagenomeseq (1.28.2-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * New upstream version (closes: #934281) * debhelper-compat 12 * Standards-Version: 4.4.0 * Build-Depends: r-bioc-wrench, r-cran-ihw . [ Steffen Moeller ] * Standards-Version: 4.5.0 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. . [ Dylan Aïssi ] * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-metagenomeseq (1.24.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.3.0 r-bioc-metagenomeseq (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-metagenomeseq (1.22.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-metagenomeseq (1.22.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-metagenomeseq (1.22.0-1) unstable; urgency=medium . * New upstream version * Maintainer: Debian R Packages Maintainers * Standards-Version: 4.1.4 r-bioc-metagenomeseq (1.20.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.3 * debhelper 11 r-bioc-metagenomeseq (1.20.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-metagenomeseq (1.18.0-1) unstable; urgency=medium . * New upstream version * Move packaging from SVN to Git * Standards-Version: 4.1.1 * Add README.source to document binary data files. r-bioc-metagenomeseq (1.16.0-2) unstable; urgency=medium . * Add missing test dependency: r-cran-testthat * debhelper 10 * d/watch: version=4 r-bioc-metagenomeseq (1.16.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * Use testthat for autopkgtest since other unittest is empty r-bioc-metagenomeseq (1.14.2-1) unstable; urgency=low . * Initial release (closes: #835135) r-bioc-metapod (1.6.0+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-metapod (1.6.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-metapod (1.4.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-metapod (1.2.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-metapod (1.0.0+dfsg-4) unstable; urgency=medium . * Team Upload. * d/t/{run-unit-test,autopkgtest-pkg-r.hook}: Ignore one failing test on armhf and ppc64el r-bioc-metapod (1.0.0+dfsg-3) unstable; urgency=medium . * Team upload. * Fixed debian/watch for BioConductor * Standards-Version: 4.6.0 (routine-update) * Trim trailing whitespace. * Tighten B-D, add patch to tighten Dependency on rcpp (>= 1.0.7) + This would pull in the right version of rcpp that metapod has been compiled against, fixing debci r-bioc-metapod (1.0.0+dfsg-2) unstable; urgency=medium . * Team Upload. * Source-only upload. r-bioc-metapod (1.0.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #994167) r-bioc-multiassayexperiment (1.24.0+dfsg-2) unstable; urgency=medium . * Team upload. * Add available Suggests to Test-Depends r-bioc-multiassayexperiment (1.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) * Build-Depends: r-bioc-biocbaseutils Closes: #1024748 r-bioc-multiassayexperiment (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-multiassayexperiment (1.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.20.0+dfsg * d/control: Run dh-update-R r-bioc-multiassayexperiment (1.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-genomicranges and r-bioc-s4vectors. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-multiassayexperiment (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-multiassayexperiment (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-multiassayexperiment (1.12.6+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-multiassayexperiment (1.12.5+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Rules-Requires-Root: no (routine-update) r-bioc-multiassayexperiment (1.12.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-multiassayexperiment (1.12.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version. * Fix autopkgtests. r-bioc-multiassayexperiment (1.12.2+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Updated d/u/metadata with ref to conda and bio.tools * Standards-Version: 4.5.0 r-bioc-multiassayexperiment (1.12.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-multiassayexperiment (1.12.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends r-bioc-multiassayexperiment (1.10.4+dfsg-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-multiassayexperiment (1.10.4+dfsg-1) unstable; urgency=medium . * Initial release (closes: #940493) r-bioc-multtest (2.54.0-1) unstable; urgency=medium . * New upstream version r-bioc-multtest (2.52.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-multtest (2.50.0-1) unstable; urgency=medium . * Team upload. * New upstream version 2.50.0 r-bioc-multtest (2.48.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-multtest (2.46.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-multtest (2.44.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-multtest (2.42.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-multtest (2.40.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-multtest (2.38.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-multtest (2.36.0-3) unstable; urgency=medium . * Standards-Version: 4.1.5 r-bioc-multtest (2.36.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-multtest (2.36.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-multtest (2.34.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Testsuite: autopkgtest-pkg-r * Do not parse d/changelog r-bioc-multtest (2.32.0-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.0.1 (no changes needed) r-bioc-multtest (2.30.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-multtest (2.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-multtest (2.24.0-1) unstable; urgency=medium . * Initial release (closes: #785210). r-bioc-nanostringqcpro (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-nanostringqcpro (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-nanostringqcpro (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Disable reprotest r-bioc-nanostringqcpro (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-nanostringqcpro (1.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-nanostringqcpro (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-nanostringqcpro (1.18.0-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. r-bioc-nanostringqcpro (1.18.0-1) unstable; urgency=medium . * Team upload. * Initial release (closes: #948881) r-bioc-noiseq (2.42.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-noiseq (2.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-noiseq (2.38.0-1) unstable; urgency=medium . * Team upload. * d/control: Run dh-update-R * New upstream version 2.38.0 r-bioc-noiseq (2.36.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-noiseq (2.34.0-1) unstable; urgency=medium . * Initial release (closes: #971632) r-bioc-oligo (1.62.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-oligo (1.60.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version 1.60.0+ds * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-oligo (1.58.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-oligo (1.56.0+ds-2) unstable; urgency=medium . * Team upload. * Prevent RUnit from writing to /usr r-bioc-oligo (1.56.0+ds-1) unstable; urgency=medium . * Team upload. * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Remove test needing package maqcExpression4plex r-bioc-oligo (1.54.1+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Remove test requiring not yet packaged oligoData * Exclude test downloading external data r-bioc-oligo (1.54.1+ds-1) unstable; urgency=medium . * Initial release (closes: #975328) r-bioc-oligoclasses (1.60.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-oligoclasses (1.58.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-oligoclasses (1.56.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.56.0 r-bioc-oligoclasses (1.54.0-5) unstable; urgency=medium . * Team upload * Exclude further tests * Do not try to write test results to /usr r-bioc-oligoclasses (1.54.0-4) unstable; urgency=medium . * Team upload. * Exclude test requiring package pd.mapping50k.hind240 and pd.mapping50k.xba240 r-bioc-oligoclasses (1.54.0-3) unstable; urgency=medium . * Team upload. * Autopkgtest: extra_restrictions=needs-internet * Disable reprotest r-bioc-oligoclasses (1.54.0-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure runit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-oligoclasses (1.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-biocgenerics, r-bioc-genomicranges and r-bioc-iranges. r-bioc-oligoclasses (1.52.0-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Add manual autopkgtest since autopkgtest-pkg-r fails to install RUnit * Remove test requiring not yet packaged genomewidesnp6Crlmm r-bioc-oligoclasses (1.52.0-1) unstable; urgency=medium . * Initial release (closes: #975258) r-bioc-org.hs.eg.db (3.16.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-org.hs.eg.db (3.15.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-org.hs.eg.db (3.14.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-org.hs.eg.db (3.13.0-2) unstable; urgency=medium . * Team upload. * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure RUnit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-org.hs.eg.db (3.13.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-org.hs.eg.db (3.12.0-1) unstable; urgency=medium . * Team upload. * Fix watch file * debhelper-compat 13 (routine-update) r-bioc-org.hs.eg.db (3.11.4-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-org.hs.eg.db (3.11.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-org.hs.eg.db (3.10.0-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 * Trim trailing whitespace. r-bioc-org.hs.eg.db (3.10.0-1) unstable; urgency=medium . * Initial release (closes: #948906) r-bioc-pcamethods (1.90.0-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit. r-bioc-pcamethods (1.88.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-pcamethods (1.86.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.86.0 r-bioc-pcamethods (1.84.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-pcamethods (1.82.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-pcamethods (1.80.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-pcamethods (1.78.0-3) unstable; urgency=medium . * Team Upload. * Update Test Depends (Fixes debci) r-bioc-pcamethods (1.78.0-2) unstable; urgency=medium . [ Nilesh Patra ] * Team Upload. * Add missing depends for autopkgtest * Add "Rules-Requires-Root:no" * Bump standards version to 4.5.0 . [ Andreas Tille ] * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-pcamethods (1.78.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-pcamethods (1.76.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-pcamethods (1.74.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-pcamethods (1.72.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Add references to registries. . [ Andreas Tille ] * New upstream version * Maintainer: Debian R Packages Maintainers * Standards-Version: 4.1.4 r-bioc-pcamethods (1.70.0-1) unstable; urgency=medium . * Initial release (closes: #892524) r-bioc-phyloseq (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-phyloseq (1.40.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Remove also README.html since it contains compressed JS r-bioc-phyloseq (1.38.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Manually fix version string of r-cran-ade4 r-bioc-phyloseq (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Submit, Repository, Repository-Browse. * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biostrings, r-cran-ape, r-cran-data.table, r-cran-foreach, r-cran-ggplot2, r-cran-plyr, r-cran-reshape2, r-cran-scales and r-cran-vegan. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-phyloseq (1.34.0+dfsg-1) unstable; urgency=medium . [ Dylan Aïssi ] * New upstream version * debhelper-compat 13 (routine-update) . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) r-bioc-phyloseq (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-phyloseq (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g * Set upstream metadata fields: Bug-Database. * Remove obsolete fields Name, Contact from debian/upstream/metadata. r-bioc-phyloseq (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends r-bioc-phyloseq (1.26.1+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright r-bioc-phyloseq (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-phyloseq (1.24.2+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends r-bioc-phyloseq (1.24.0+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends * Manually change r-cran-ade4 (>= 1.7.4) to (>= 1.7-4) since DESCRIPTION is using wrong version string * Remove autogenerated HTML docs since it is including compressed JS r-bioc-phyloseq (1.24.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-phyloseq (1.24.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends * Manually fix versioned Depends: r-cran-ade4 (s/1.7.4/1.7-4/) * Standards-Version: 4.1.4 r-bioc-phyloseq (1.22.3-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-phyloseq (1.20.0-2) unstable; urgency=medium . * Standards-Version: 4.1.1 r-bioc-phyloseq (1.20.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.0 (nn changes needed) * Add debian/README.source to document binary files r-bioc-phyloseq (1.19.1-2) unstable; urgency=medium . * Fix versioned depends from r-cran-ade4 Closes: #850767 r-bioc-phyloseq (1.19.1-1) unstable; urgency=medium . * New upstream version r-bioc-phyloseq (1.18.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 r-bioc-phyloseq (1.18.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * d/watch: version=4 r-bioc-phyloseq (1.16.2-1) unstable; urgency=low . * Initial release (closes: #837600) r-bioc-preprocesscore (1.60.0+ds-1) unstable; urgency=medium . * New upstream version r-bioc-preprocesscore (1.58.0+ds-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-preprocesscore (1.56.0+ds-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-preprocesscore (1.54.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Clean repeated builds * Added registry entries to d/u/metadata * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-preprocesscore (1.52.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * watch file standard 4 (routine-update) r-bioc-preprocesscore (1.52.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-preprocesscore (1.50.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-preprocesscore (1.48.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-preprocesscore (1.46.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-preprocesscore (1.44.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Secure URI in copyright format r-bioc-preprocesscore (1.42.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-preprocesscore (1.42.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 * Secure URI in watch file r-bioc-preprocesscore (1.40.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-preprocesscore (1.38.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) r-bioc-preprocesscore (1.36.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-preprocesscore (1.34.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-preprocesscore (1.32.0-1) unstable; urgency=medium . * New upstream version r-bioc-preprocesscore (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-preprocesscore (1.28.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-preprocesscore (1.26.1-1) unstable; urgency=low . * New upstream version * debian/{control,copyright}: Fixed homepage * cme fix dpkg-control * add autookgtest r-bioc-preprocesscore (1.22.0-1) unstable; urgency=low . * Initial release (closes: #720550) r-bioc-progeny (1.20.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-progeny (1.18.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Build-Depends: r-bioc-decoupler * Remove autogenerated HTML docs since it is including compressed JS * Review d/copyright r-bioc-progeny (1.16.0+ds-3) unstable; urgency=medium . * Team upload. * Re-build with bioc 3.15 r-bioc-progeny (1.16.0+ds-2) unstable; urgency=medium . * Team upload. * Enhance description. r-bioc-progeny (1.16.0+ds-1) unstable; urgency=medium . * Initial release (closes: #993976) r-bioc-protgenerics (1.30.0-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-protgenerics (1.28.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-protgenerics (1.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-protgenerics (1.24.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found r-bioc-protgenerics (1.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-protgenerics (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-protgenerics (1.18.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-protgenerics (1.16.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-protgenerics (1.14.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-protgenerics (1.12.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-protgenerics (1.12.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-protgenerics (1.12.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * No upstream tests provided any more, fall back to Testsuite: autopkgtest-pkg-r r-bioc-protgenerics (1.10.0-1) unstable; urgency=medium . * New upstream version r-bioc-protgenerics (1.8.0-1) unstable; urgency=medium . * Initial release (closes: #879154) r-bioc-pwmenrich (4.34.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-pwmenrich (4.32.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-pwmenrich (4.30.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-pwmenrich (4.28.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-pwmenrich (4.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-pwmenrich (4.24.2-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-pwmenrich (4.23.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-pwmenrich (4.22.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-pwmenrich (4.22.0-1) unstable; urgency=medium . * Initial release (closes: #954848) r-bioc-qtlizer (1.12.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-qtlizer (1.10.0+dfsg-1) unstable; urgency=medium . * Team upload. * Disable reprotest * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-qtlizer (1.8.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-qtlizer (1.8.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Manually re-add Build-Depends: r-cran-knitr and r-cran-markdown to rebuild the docs * Add marker to not delete the needed Build-Depends r-bioc-qtlizer (1.6.0+dfsg-2) unstable; urgency=medium . * Re-add needed B-D. Fix FTBFS r-bioc-qtlizer (1.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found r-bioc-qtlizer (1.4.0+dfsg-2) unstable; urgency=medium . * Source-only upload for testing migration. r-bioc-qtlizer (1.4.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #986052) r-bioc-qusage (2.32.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-qusage (2.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-qusage (2.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version 2.28.0 r-bioc-qusage (2.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-qusage (2.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-qusage (2.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-qusage (2.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-qusage (2.18.0-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.4.1 r-bioc-qusage (2.18.0-1) unstable; urgency=medium . * Initial release (closes: #935157) r-bioc-qvalue (2.30.0-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-qvalue (2.28.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-qvalue (2.26.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-qvalue (2.24.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-qvalue (2.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-qvalue (2.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-qvalue (2.18.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-qvalue (2.16.0-1) unstable; urgency=medium . * New upstream version r-bioc-qvalue (2.14.1-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-qvalue (2.14.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-qvalue (2.12.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-qvalue (2.12.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-qvalue (2.12.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 r-bioc-qvalue (2.10.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-qvalue (2.8.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.1 * Add binary dataset to debian/README.source * Fix permissions * Do not parse d/changelog r-bioc-qvalue (2.6.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * d/watch: version=4 r-bioc-qvalue (2.4.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Drop references to r-cran-qvalue in d/control r-bioc-qvalue (2.2.0-1) unstable; urgency=medium . * New upstream version r-bioc-qvalue (2.0.0-1) unstable; urgency=medium . * New upstream version * Add new (Build-)Dependencies: r-cran-ggplot2, r-cran-reshape2 * drop debian/vignettes * Adapt autopkgtest r-bioc-qvalue (1.40.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Fetch vignette from upstream SVN to enable reproducing pdf documentation and run test suite * Add autopkgtest * Replace README.Debian by README.source explaining how to recreate the doc rather than removing it r-bioc-qvalue (1.38.0+dfsg-1) unstable; urgency=low . [ Steffen Moeller ] * DMUA flag is now obsolete . [ Charles Plessy ] * debian/control: removed myself from Uploaders. . [ Andreas Tille ] * moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control * debhelper 9 * use Files-Excluded to delete binary file without source r-bioc-qvalue (1.34.0+dfsg-1) unstable; urgency=low . * New upstream version. * Bumped policy to 3.9.4 (no changes required) * Built for R version 3 r-bioc-qvalue (1.30.0-1) unstable; urgency=low * New upstream version which is now provided at BioConductor and thus we also do a name change in the packaging * debian/get-orig-source: Remove "binary without source" manual.pdf from upstream source * debian/control: - s/cran/bioc/ (package names, Vcs fields) - Replaces/Provides/Conflicts: r-cran-qvalue - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) which is supporting R:Depends substitution variable * debian/rules: Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk * debian/watch: Detect new version (thanks to Paul Wise for the tip) * debian/README.test: advise how to test the package * debian/copyright: - Fixed DEP5 issues using `cme fix dpkg-copyright` - s/LGPL-3+/LGPL/ as specified in DESCRIPTION * debian/README.Debian: Document removal of manual.pdf and where it can be found online r-bioc-rbgl (1.74.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rbgl (1.72.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-rbgl (1.70.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.70.0+dfsg r-bioc-rbgl (1.68.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Contact. * Provide autopkgtest-pkg-r.conf to make sure RUnit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-rbgl (1.66.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-rbgl (1.64.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-rbgl (1.62.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-rbgl (1.60.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright r-bioc-rbgl (1.58.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rbgl (1.58.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-rbgl (1.56.0+dfsg-2) unstable; urgency=medium . * Team upload. * Fix Maintainer and Vcs-fields * Add comment that libboost-dev is really needed r-bioc-rbgl (1.56.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 r-bioc-rbgl (1.54.0+dfsg-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-rbgl (1.52.0+dfsg-1) unstable; urgency=medium . * Team upload * New upstream version * Secure URI in watch file * Standards-Version: 4.1.1 * debhelper 10 * Add debian/README.source to document binary data files * Do not parse d/changelog r-bioc-rbgl (1.50.0+dfsg1-1) unstable; urgency=medium . * Team upload * Exclude more files according to a hint of ftpmaster * d/watch: use xz compression r-bioc-rbgl (1.50.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Switch to dh-r * Generic BioConductor homepage r-bioc-rbgl (1.48.1+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #834398) r-bioc-rcpi (1.34.0+ds-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-rcpi (1.32.2+ds-1) unstable; urgency=medium . * New upstream version r-bioc-rcpi (1.32.1+ds-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-rcpi (1.32.1+ds-1) unstable; urgency=medium . * New upstream version r-bioc-rcpi (1.32.0+ds-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-rcpi (1.30.0+ds-1) unstable; urgency=medium . * New upstream version r-bioc-rcpi (1.28.0+ds-2) unstable; urgency=medium . * Team upload. + Source-only upload for testing migration r-bioc-rcpi (1.28.0+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Initial release (closes: #954851) . [ Steffen Moeller ] * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-residualmatrix (1.8.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-residualmatrix (1.6.1+dfsg-2) unstable; urgency=medium . * Team upload. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-residualmatrix (1.6.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-residualmatrix (1.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-residualmatrix (1.4.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-residualmatrix (1.2.0+dfsg-2) unstable; urgency=medium . * Source-only upload. r-bioc-residualmatrix (1.2.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #994615) r-bioc-rhdf5 (2.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-rhdf5 (2.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 2.40.0+dfsg * d/p/fix-hdf5deref.patch: Default H5Rdereference to H5Rdereference2 if it has been defined * Add d/clean for cleaning redundant files * Versioned B-D to build with right deps r-bioc-rhdf5 (2.38.1+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-rhdf5 (2.38.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rhdf5 (2.38.0+dfsg-2) unstable; urgency=medium . * Team upload. * Add r-bioc-mockery to test-dep (Fixes autopkgtest) r-bioc-rhdf5 (2.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 2.38.0+dfsg r-bioc-rhdf5 (2.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Versioned Build-Depends: libhdf5-dev (>= 1.10.7) r-bioc-rhdf5 (2.34.0+dfsg-1) unstable; urgency=medium . [ Dylan Aïssi ] * Team upload. * New upstream version * New Build-Depends: r-bioc-rhdf5filters r-bioc-rhdf5 (2.32.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rhdf5 (2.32.3+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Repository. r-bioc-rhdf5 (2.32.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rhdf5 (2.32.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-rhdf5 (2.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-rhdf5 (2.30.1+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Test-Depends: r-cran-bit64 * Fix Test failures with latest rhdf5 r-bioc-rhdf5 (2.30.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * Add libhdf5-dev to Build-Depends r-bioc-rhdf5 (2.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * Remove trailing whitespace in debian/copyright r-bioc-rhdf5 (2.26.2+dfsg-2) unstable; urgency=medium . * Team upload * Use DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE to fix build on *i386 r-bioc-rhdf5 (2.26.2+dfsg-1) unstable; urgency=medium . * Initial release (closes: #928761) r-bioc-rhdf5filters (1.10.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reorder sequence of d/control fields by cme (routine-update) * Update lintian override info format in d/r-bioc-rhdf5filters.lintian-overrides on line 2. r-bioc-rhdf5filters (1.8.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.8.0+dfsg * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-rhdf5filters (1.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.6.0+dfsg r-bioc-rhdf5filters (1.4.0+dfsg-3) unstable; urgency=medium . * Team Upload. * d/t/autopkgtest-pkg-r.conf: Fix the name of test-depends, r-cran-rhdf5 => r-bioc-rhdf5 (Closes: #995208) r-bioc-rhdf5filters (1.4.0+dfsg-2) unstable; urgency=medium . * Team upload. * Test-Depends: r-cran-rhdf5 * Disable reprotest r-bioc-rhdf5filters (1.4.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found r-bioc-rhdf5filters (1.2.0+dfsg2-1) unstable; urgency=medium . * Team upload. * debian/copyright: we had excluded too much, keep H5Zblosc.c & H5Zbzip2.c * debian/patches/use_debian_packaged_libs.patch: adjust to correctly build libH5Zblosc.so & libH5Zbz2.so against the debian packages * debian/control: add missing build-dep on libhdf5-dev * debian/patches/hardening: propagate Debian provided build flags * Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. r-bioc-rhdf5filters (1.2.0+dfsg-4) unstable; urgency=medium . * Team upload. * Don't test for SSE2 on non-x86. Fixes FTBFS on those archs. * Mark debian/patches/{use_debian_packaged_libs,skip_tests.patch}.patch, as not needing forwarding upstream. r-bioc-rhdf5filters (1.2.0+dfsg-3) unstable; urgency=medium . * Create fake plugins by symlinks to real libraries: libbz2 and libblosc * Re-enable autopkgtests r-bioc-rhdf5filters (1.2.0+dfsg-2) unstable; urgency=medium . * Team upload. r-bioc-rhdf5filters (1.2.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #973788) * Improve d/copyright r-bioc-rhdf5lib (1.20.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rhdf5lib (1.18.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rhdf5lib (1.18.0+dfsg-2) unstable; urgency=medium . * Team upload. * Revert "Update d/links to symlink to correct hdf5 include serial dir" -- the include dir got bad in last upload * Pass correct file (libhdf5.settings) to check settings r-bioc-rhdf5lib (1.18.0+dfsg-1) unstable; urgency=medium . * Team upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) . [ Nilesh Patra ] * Add d/clean for cleaning redundant files * Adapt patch to later version * Re-instantiate d/p/pass-correct-path-for-getting-env.patch: Pass correct filepath to fix autopkgtests * Update d/links to symlink to correct hdf5 include serial dir r-bioc-rhdf5lib (1.16.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rhdf5lib (1.14.2+dfsg-2) unstable; urgency=medium . * Team Upload. * d/p/pass-correct-path-for-getting-env.patch: Pass correct filepath to fix autopkgtests r-bioc-rhdf5lib (1.14.2+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. r-bioc-rhdf5lib (1.12.1+dfsg-3) unstable; urgency=medium . * Depends: libhdf5-dev Closes: #986077 r-bioc-rhdf5lib (1.12.1+dfsg-2) unstable; urgency=medium . * r-bioc-biocstyle is now available thus add it to Test-Depends r-bioc-rhdf5lib (1.12.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rhdf5lib (1.12.0+dfsg-1) unstable; urgency=medium . * Team upload. . [ Dylan Aïssi ] * New upstream version . [ Steffen Moeller ] * Cleaner clean to help routine-update. r-bioc-rhdf5lib (1.10.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-rhdf5lib (1.10.0+dfsg1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-rhdf5lib (1.8.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rhdf5lib (1.6.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-rhdf5lib (1.6.1+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 r-bioc-rhdf5lib (1.6.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R should not remove libhdf5-dev dependency r-bioc-rhdf5lib (1.4.3+dfsg-2) unstable; urgency=medium . * Team upload * Use DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE to fix build on *i386 r-bioc-rhdf5lib (1.4.3+dfsg-1) unstable; urgency=medium . * Initial release (closes: #927975) r-bioc-rhtslib (2.0.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rhtslib (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Trim trailing whitespace. r-bioc-rhtslib (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.26.0+dfsg r-bioc-rhtslib (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-rhtslib (1.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Repository. r-bioc-rhtslib (1.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-rhtslib (1.18.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 r-bioc-rhtslib (1.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Build-Depends: + libcurl4-openssl-dev r-bioc-rhtslib (1.16.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-rhtslib (1.16.2+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Repository. * Test-Depends: r-cran-rmarkdown, pandoc-citeproc * Deactivate autopkgtest since it needs not yet packaged r-bioc-biocstyle r-bioc-rhtslib (1.16.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #931394) r-bioc-rots (1.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-rots (1.24.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-rots (1.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.22.0 r-bioc-rots (1.20.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-rots (1.18.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-rots (1.16.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rots (1.14.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-rots (1.14.0-1) unstable; urgency=medium . * Initial release (closes: #956231) r-bioc-rsamtools (2.14.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-rsamtools (2.12.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-rsamtools (2.10.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-rsamtools (2.8.0-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * d/u/metadata: Added references to registries . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-rsamtools (2.6.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-rsamtools (2.4.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Testsuite: autopkgtest-pkg-r (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-rsamtools (2.2.3-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsamtools (2.2.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) r-bioc-rsamtools (2.2.1-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Add libcurl4-openssl-dev to Build-Depends r-bioc-rsamtools (2.0.3-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends r-bioc-rsamtools (2.0.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.4.0 * dh-update-R to update Build-Depends r-bioc-rsamtools (2.0.1-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 r-bioc-rsamtools (2.0.0-1) unstable; urgency=medium . * New upstream version * New Build-Depends: r-bioc-rhtslib r-bioc-rsamtools (1.34.1-1) unstable; urgency=medium . [ Dylan Aïssi ] * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright r-bioc-rsamtools (1.34.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsamtools (1.32.3-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-rsamtools (1.32.2-1) unstable; urgency=medium . * New upstream version r-bioc-rsamtools (1.32.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-rsamtools (1.32.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file * Do not try to use libbam-dev which is a way more recent version but incompatible version than what is shipped inside r-bioc-rsamtools source download r-bioc-rsamtools (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-rsamtools (1.28.0-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-rsamtools (1.28.0-1) unstable; urgency=medium . * Team upload * New upstream version * Drop unused debian/patches/use-debian-packaged-libs.patch r-bioc-rsamtools (1.26.1-2) unstable; urgency=medium . * Remove test requiring network connection * debhelper 10 * d/watch: version=4 * drop unused lintian override r-bioc-rsamtools (1.26.1-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-rsamtools (1.24.0-1) unstable; urgency=medium . * New upstream version * Fix versioned Dependencies r-bioc-rsamtools (1.22.0-2) unstable; urgency=medium . * Fix autopkgtest by adding r-cran-runit * cme fix dpkg-control r-bioc-rsamtools (1.22.0-1) unstable; urgency=medium . * New upstream version * (Build-)Depends: r-bioc-biocparallel * Add lintian-override for false positive r-bioc-rsamtools (1.20.4-1) unstable; urgency=medium . * New upstream version r-bioc-rsamtools (1.20.1-1) unstable; urgency=medium . * New upstream version * Activate autopkgtest r-bioc-rsamtools (1.18.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-rsamtools (1.16.1-2) unstable; urgency=medium . * debian/README.test: Fix advise for testing the package * debian/control: Recommends: r-bioc-shortread * Rebuild against recent BioC tools Closes: #753233 r-bioc-rsamtools (1.16.1-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * debian/README.test: More verbose information how to run the test suite r-bioc-rsamtools (1.14.2-1) unstable; urgency=low . * New upstream version (adapted patch) Closes: #730984 * Build-Depends: r-bioc-xvector r-bioc-rsamtools (1.12.4-1) unstable; urgency=low . * Initial release (closes: #728285) r-bioc-rsubread (2.12.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsubread (2.10.5-1) unstable; urgency=medium . * Team upload. * Silence Salsa CI about failures with i386 builds r-bioc-rsubread (2.10.4-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsubread (2.10.3-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsubread (2.10.2-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsubread (2.10.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Fix permissions r-bioc-rsubread (2.10.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-rsubread (2.8.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Maintainer: Debian R Packages Maintainers (R-U) * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-rsubread (2.8.1-1) unstable; urgency=medium . * Team upload. * Disable reprotest * Set field Upstream-Contact in debian/copyright. * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). r-bioc-rsubread (2.6.4-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Contact. r-bioc-rsubread (2.4.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-rsubread (2.4.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsubread (2.4.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsubread (2.2.6-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rsubread (2.2.5-1) unstable; urgency=medium . * Team upload. * New upstream version Closes: #966236 * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Trim trailing whitespace. r-bioc-rsubread (2.2.2-1) unstable; urgency=medium . * Initial release (closes: #962657) . * Second upload fixes a missing copyright by Indiana university in ./src/HelperFunctions.c - mystery-spotted by FTPadmin Thorsten. Many thanks! . Took this opportunity to change the license from GPL-3 to GPL-3+ since whenever the GPL-header was put into the source tree, this read "or any later version". Informed all three upstream authors with a request to clear this up in the DESCRIPTION file as GPL (>= 3.0). r-bioc-rwikipathways (1.18.0+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Bug-Submit. r-bioc-rwikipathways (1.16.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-rwikipathways (1.14.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rwikipathways (1.12.0+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Disable reprotest . [ Nilesh Patra ] * d/tests/autopkgtest-pkg-r.conf: test depends on testthat r-bioc-rwikipathways (1.10.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rwikipathways (1.8.5+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rwikipathways (1.8.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-rwikipathways (1.8.3+dfsg-1) unstable; urgency=medium . * Add upstream metadata * New upstream version * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. r-bioc-rwikipathways (1.6.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #950785) r-bioc-s4vectors (0.36.0-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-s4vectors (0.32.4-2) unstable; urgency=medium . * Team upload. * Re-build with R 4.2.0-1 r-bioc-s4vectors (0.32.4-1) unstable; urgency=medium . * Team Upload. * New upstream version 0.32.4 * Add upstream commits as patch to fix autopkgtest r-bioc-s4vectors (0.32.3-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.30.2-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.30.1-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-s4vectors (0.30.1-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-s4vectors (0.30.0-1) unstable; urgency=medium . * Team upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-s4vectors (0.28.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-bioc-s4vectors (0.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-s4vectors (0.26.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-s4vectors (0.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-s4vectors (0.24.4-1) unstable; urgency=medium . * Team upload. * New upstream version * Testsuite: autopkgtest-pkg-r (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-s4vectors (0.24.3-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) r-bioc-s4vectors (0.24.2-2) unstable; urgency=medium . * Team upload * Bump Breaks: r-bioc-iranges (<< 2.20.2~) r-bioc-s4vectors (0.24.2-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-s4vectors (0.24.1-2) unstable; urgency=medium . * Team upload. * Fix autopkgtests (Closes: #947004). r-bioc-s4vectors (0.24.1-1) unstable; urgency=medium . * New upstream version * debian/copyright: use spaces rather than tabs to start continuation lines. r-bioc-s4vectors (0.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-s4vectors (0.22.1-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.0 r-bioc-s4vectors (0.22.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-s4vectors (0.20.1-2) unstable; urgency=medium . * Team upload. * Bump version of broken packages. (Closes: #913305) Breaks: r-bioc-genomicalignments (<< 1.18~) r-bioc-iranges (<< 2.16~) r-bioc-shortread (<< 1.40~) r-bioc-variantannotation (<< 1.28~) r-bioc-s4vectors (0.20.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-s4vectors (0.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-s4vectors (0.18.3-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.18.2-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.18.1-4) unstable; urgency=medium . * Team upload * Additional breaks: r-bioc-genomicalignments (<< 1.16~) r-bioc-shortread (<< 1.38~) r-bioc-variantannotation (<< 1.26~) r-bioc-s4vectors (0.18.1-3) unstable; urgency=medium . * Team upload * Indicate that this version breaks r-bioc-iranges (<< 2.14~) r-bioc-s4vectors (0.18.1-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-s4vectors (0.18.1-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.18.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-s4vectors (0.16.0-1) unstable; urgency=medium . * New upstream version * Bump versioned Build-Depends: r-bioc-biocgenerics (>= 0.23.3) r-bioc-s4vectors (0.14.7-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Build-Depends: r-bioc-biocgenerics (>= 0.22.1) * Remove unnecessary testsuite autopkgtest-header r-bioc-s4vectors (0.14.3-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-s4vectors (0.14.1-1) unstable; urgency=medium . * Team upload * New upstream version * Bump versioned Build-Depends: r-bioc-biocgenerics (>= 0.21.1) r-bioc-s4vectors (0.12.1-2) unstable; urgency=medium . * Add missing dependency for autopkgtest: r-bioc-genomicranges r-bioc-s4vectors (0.12.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-s4vectors (0.12.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-s4vectors (0.10.2-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.10.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-s4vectors (0.8.11-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-s4vectors (0.8.0-1) unstable; urgency=medium . * New upstream version * Bumped versioned Build-Depends and Recommends r-bioc-s4vectors (0.6.6-1) unstable; urgency=medium . * New upstream version * Fixed watch file r-bioc-s4vectors (0.6.2-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.6.0-1) unstable; urgency=medium . * New upstream version r-bioc-s4vectors (0.4.0-1) experimental; urgency=medium . * Initial release (closes: #765603) r-bioc-savr (1.36.0-2) unstable; urgency=medium . * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-savr (1.36.0-1) unstable; urgency=medium . * New upstream version r-bioc-savr (1.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-savr (1.32.0-1) unstable; urgency=medium . * New upstream version r-bioc-savr (1.30.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-savr (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-savr (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-savr (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-savr (1.22.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-savr (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version. * Add Testsuite: autopkgtest-pkg-r. * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-savr (1.18.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-savr (1.18.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-savr (1.18.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * Standards-Version: 4.1.4 r-bioc-savr (1.16.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-savr (1.14.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.1 r-bioc-savr (1.12.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-savr (1.10.0-1) unstable; urgency=low . * Initial release (closes: #834720) r-bioc-scaledmatrix (1.6.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-scaledmatrix (1.4.1+dfsg-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.4.1+dfsg r-bioc-scaledmatrix (1.4.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-scaledmatrix (1.2.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-scaledmatrix (1.0.0+dfsg-2) unstable; urgency=medium . * Team upload. + Source-only Upload for testing migration r-bioc-scaledmatrix (1.0.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #993771) r-bioc-scater (1.26.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) * Build-Depends: r-cran-ggrastr Closes: #1024751 r-bioc-scater (1.24.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Build-Depends: r-cran-rcppml * Ignore test requiring not yet packaged r-bioc-snifter Closes: #1011412 r-bioc-scater (1.22.0+ds-2) unstable; urgency=medium . * Team upload. * Re-build with bioc-3.15 r-bioc-scater (1.22.0+ds-1) unstable; urgency=medium . * Team upload. * Disable reprotest * dh-update-R to update Build-Depends (routine-update) r-bioc-scater (1.20.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database. r-bioc-scater (1.18.3+ds-4) unstable; urgency=medium . * Team upload * Skip Testsuite: autopkgtest-pkg-r Closes: #982115 r-bioc-scater (1.18.3+ds-3) unstable; urgency=medium . * Team upload. * Ignore some failing tests on i386 * Standards-Version: 4.5.1 (routine-update) * Architecture: all r-bioc-scater (1.18.3+ds-2) unstable; urgency=medium . * Team upload. * debian/control: Restore build-dep on r-bioc-scuttle, r-bioc-delayedmatrixstats r-bioc-scater (1.18.3+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version . [ Michael R. Crusoe ] * debian/control: build-dep on r-bioc-scuttle r-bioc-scater (1.16.2+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) r-bioc-scater (1.16.2+ds-1) unstable; urgency=medium . * Initial release (closes: #969060) r-bioc-scran (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-scran (1.24.1+dfsg-2) unstable; urgency=medium . * Disable reprotest * Sync Test-Depends with Suggests from DESCRIPTION r-bioc-scran (1.24.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scran (1.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-scran (1.22.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scran (1.20.1+dfsg-2) unstable; urgency=medium . * Team Upload. * d/t/autopkgtest-pkg-r.hook: Trigger hook to skip a couple of tests if r-bioc-residualmatrix is not available + r-bioc-residualmatrix is in new, this hook can be dropped after that gets in. Not removing the hook should not break autopkgtests either. r-bioc-scran (1.20.1+dfsg-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r TODO: r-bioc-metapod (ITP #994167 in new) . [ Nilesh Patra ] * d/control: Add B-D on r-bioc-metapod r-bioc-scran (1.18.5+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scran (1.18.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scran (1.18.3+dfsg-2) unstable; urgency=medium . * Team upload. * Try building on "any" architecture. r-bioc-scran (1.18.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Trim trailing whitespace. * debian/control: only build for architectures where the autopkgtests pass r-bioc-scran (1.18.1+dfsg-2) unstable; urgency=medium . * Team upload. * debian/control: Turn off autopkgtest-pkg-r as it isn't picking up on a needed dependency. * debian/tests/control: add missing g++ and libpcg-cpp-dev test dependency * debian/upstream/metadata: add links to their GitHub repository. r-bioc-scran (1.18.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debian/control: add build-dep on r-bioc-scuttle and r-bioc-bluster * Standards-Version: 4.5.1 (routine-update) r-bioc-scran (1.16.0+dfsg-2) unstable; urgency=medium . * Team upload. * Fixed debian/watch for BioConductor * debhelper-compat 13 (routine-update) r-bioc-scran (1.16.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #970004) r-bioc-scuttle (1.8.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-scuttle (1.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-scuttle (1.6.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-scuttle (1.6.2+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-scuttle (1.6.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-scuttle (1.6.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-scuttle (1.4.0+dfsg-3) unstable; urgency=medium . * Team Upload. * Fix path in autopkgtest hook r-bioc-scuttle (1.4.0+dfsg-2) unstable; urgency=medium . * Team Upload. * d/t/autopkgtest-pkg-r.hook: Ignore selected tests also on pkg-r-autopkgtest r-bioc-scuttle (1.4.0+dfsg-1) unstable; urgency=medium . * New upstream version * Testsuite: autopkgtest-pkg-r (routine-update) r-bioc-scuttle (1.2.1+dfsg-3) unstable; urgency=medium . * Team Upload. * d/t/run-unit-test: Fix substitution file r-bioc-scuttle (1.2.1+dfsg-2) unstable; urgency=medium . * Team Upload. * d/t/run-unit-test: Skip more failing tests on armhf and ppc64el * d/control: Do not run autodep8 tests r-bioc-scuttle (1.2.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) r-bioc-scuttle (1.0.4+dfsg-5) unstable; urgency=medium . * Team upload. * Don't use pkg-r-autopkgtest instead of deleting files r-bioc-scuttle (1.0.4+dfsg-4) unstable; urgency=medium . * Remove whole test file to let tests finally pass on armhf and ppc64el r-bioc-scuttle (1.0.4+dfsg-3) unstable; urgency=medium . * Keep on testing on armhf and ppc64el but exclude single test that is failing on this architecture r-bioc-scuttle (1.0.4+dfsg-2) unstable; urgency=medium . * Team upload. * Skip tests on armhf, ppc64el r-bioc-scuttle (1.0.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scuttle (1.0.3+dfsg-1) unstable; urgency=medium . * New upstream version * Trim trailing whitespace. r-bioc-scuttle (1.0.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) r-bioc-scuttle (1.0.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #974976) r-bioc-seqlogo (1.64.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-seqlogo (1.62.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-seqlogo (1.60.0+dfsg-1) unstable; urgency=medium . * Remove autogenerated HTML docs since it is including compressed JS * New upstream version r-bioc-seqlogo (1.58.0+dfsg-1) unstable; urgency=medium . * Remove autogenerated HTML docs since it is including compressed JS r-bioc-seqlogo (1.58.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. . [ Andreas Tille ] * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found r-bioc-seqlogo (1.56.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-seqlogo (1.54.3-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-seqlogo (1.52.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-seqlogo (1.50.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-seqlogo (1.48.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-seqlogo (1.46.0-1) unstable; urgency=medium . * Initial release (closes: #899051) r-bioc-shortread (1.56.1-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-shortread (1.54.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-shortread (1.52.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-shortread (1.50.0-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * d/u/metadata: Completed references to registries * d/rules: Cleaning files auto-generated during build . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-shortread (1.48.0-2) unstable; urgency=medium . * Exclude failing test on non-Intel architectures Closes: #980082 r-bioc-shortread (1.48.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-shortread (1.46.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-shortread (1.44.3-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 r-bioc-shortread (1.44.1-1) unstable; urgency=medium . * New upstream version r-bioc-shortread (1.44.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-shortread (1.42.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright r-bioc-shortread (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-shortread (1.38.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-shortread (1.38.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-shortread (1.36.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.3 * debhelper 11 r-bioc-shortread (1.36.0-1) unstable; urgency=medium . * New upstream version r-bioc-shortread (1.34.2-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-shortread (1.34.1-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Add debian/README.source to document binary data files r-bioc-shortread (1.34.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) * Drop unused lintian overrides r-bioc-shortread (1.34.0-1) unstable; urgency=medium . * Team upload * New upstream version * Add Build-Depends: r-bioc-rsamtools (>= 1.28.0) r-bioc-shortread (1.32.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-shortread (1.30.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-shortread (1.28.0-1) unstable; urgency=medium . * New upstream version * Ignore false positive lintian warnings r-bioc-shortread (1.26.0-1) unstable; urgency=medium . * New upstream version Closes: #789985 r-bioc-shortread (1.24.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * adapt testsuite r-bioc-shortread (1.22.0-1) unstable; urgency=medium . * New upstream version * Moved debian/upstream to debian/upstream/metadata * Add autopkgtest * (Build-)Depends: r-bioc-genomicalignments Closes: #753224 r-bioc-shortread (1.20.0-1) unstable; urgency=low . * Initial release (closes: #731085) r-bioc-singlecellexperiment (1.20.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-singlecellexperiment (1.18.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-singlecellexperiment (1.18.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-singlecellexperiment (1.16.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version 1.16.0+ds r-bioc-singlecellexperiment (1.14.1+ds1-1) unstable; urgency=medium . * Drop another doc with compressed JS * Disable reprotest r-bioc-singlecellexperiment (1.14.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-singlecellexperiment (1.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-singlecellexperiment (1.10.1+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Trim trailing whitespace. r-bioc-singlecellexperiment (1.10.1+ds-1) unstable; urgency=medium . * Initial release (closes: #969049) r-bioc-singler (2.0.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-singler (1.10.0+ds-1) unstable; urgency=medium . * Disable reprotest * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-singler (1.8.1+ds-2) unstable; urgency=medium . * Team upload. * Update Test-Depends r-bioc-singler (1.8.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-singler (1.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version 1.8.0+ds r-bioc-singler (1.6.1+ds-2) unstable; urgency=medium . * Team Upload. * d/p/i386.patch: Pass relevant flags to fix i386 autopkgtest r-bioc-singler (1.6.1+ds-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-singler (1.4.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-singler (1.4.0+ds-3) unstable; urgency=medium . * Team upload. * Add missing build-dep r-bioc-delayedmatrixstats, deleted by routine-upgrade (!!!) r-bioc-singler (1.4.0+ds-2) unstable; urgency=medium . * Team upload. * debian/tests/autopkgtest-pkg-r.conf: r-bioc-{scran,scuttle} are required for the tests * Standards-Version: 4.5.1 (routine-update) r-bioc-singler (1.4.0+ds-1) unstable; urgency=medium . [ Dylan Aïssi ] * Team upload. * New upstream version * Trim trailing whitespace. . [ Michael R. Crusoe ] * Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. r-bioc-singler (1.2.4+ds-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Exclude one test from autopkgtest that takes for ever r-bioc-singler (1.2.4+ds-1) unstable; urgency=medium . * Initial release (closes: #970002) r-bioc-snpstats (1.48.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-snpstats (1.46.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-snpstats (1.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.44.0+dfsg r-bioc-snpstats (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * watch file standard 4 (routine-update) r-bioc-snpstats (1.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-snpstats (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-snpstats (1.36.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-snpstats (1.34.0+dfsg-1) unstable; urgency=medium . [ Dylan Aïssi ] * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright * Enhance description r-bioc-snpstats (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-snpstats (1.30.0+dfsg-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-snpstats (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-snpstats (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 10 r-bioc-snpstats (1.26.0+dfsg-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Remove unneeded autopkgtest header * Remove unused lintian override r-bioc-snpstats (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-snpstats (1.22.0+dfsg-2) unstable; urgency=medium . * Add missing test dependency (thanks for the patch to Gordon Ball) r-bioc-snpstats (1.22.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-snpstats (1.20.0+dfsg-2) unstable; urgency=medium . * Fix autopkgtest * cme fix dpkg-control * d/watch: use xz compression r-bioc-snpstats (1.20.0+dfsg-1) unstable; urgency=medium . * New upstream version * lintian override for false positive r-bioc-snpstats (1.18.0+dfsg-1) unstable; urgency=medium . * New upstream version * Exclude tests needing not packaged CRAN packages * d/watch: proper versionmangling r-bioc-snpstats (1.16.0+dfsg-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * debian/copyright: Upstream has dropped code copies r-bioc-snpstats (1.14.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #756003) r-bioc-sparsematrixstats (1.10.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-sparsematrixstats (1.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-sparsematrixstats (1.6.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.6.0+dfsg * d/control: Run dh-update-R r-bioc-sparsematrixstats (1.4.2+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Test-Depends: r-cran-testthat r-bioc-sparsematrixstats (1.2.1+dfsg-4) unstable; urgency=high . * Team upload. * debian/docs: Removed, no longer relevant r-bioc-sparsematrixstats (1.2.1+dfsg-3) unstable; urgency=high . * Team upload. * Delete the manual autopkgtests, the automatic ones do the same thing. r-bioc-sparsematrixstats (1.2.1+dfsg-2) unstable; urgency=high . * Team upload. * Tighten dependency on r-cran-matrixstats r-bioc-sparsematrixstats (1.2.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-sparsematrixstats (1.2.0+dfsg-4) unstable; urgency=medium . * Team upload. * Add patches from upstream to fix support for non-x86 architectures. r-bioc-sparsematrixstats (1.2.0+dfsg-3) unstable; urgency=medium . * Team upload. * debian/control: restrict to architectures where the autotests pass. * Standards-Version: 4.5.1 (routine-update) r-bioc-sparsematrixstats (1.2.0+dfsg-2) unstable; urgency=medium . * debhelper-compat 13 (routine-update) * Trim trailing whitespace. r-bioc-sparsematrixstats (1.2.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #973810) r-bioc-stringdb (2.10.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-stringdb (2.8.4-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-stringdb (2.8.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-stringdb (2.6.5-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-stringdb (2.6.3-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-stringdb (2.6.1-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Remove one failing test which fails for unknown reasons * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-stringdb (2.6.0-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Trim trailing whitespace. . [ Nilesh Patra ] * d/control: Add r-cran-sqldf to B-D * Add needs-internet restrictions r-bioc-stringdb (2.4.1-1) unstable; urgency=medium . * Initial release (closes: #994394) r-bioc-summarizedexperiment (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-summarizedexperiment (1.26.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-summarizedexperiment (1.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-summarizedexperiment (1.22.0+dfsg-1) unstable; urgency=medium . [ Steffen Moeller ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * No tab in license text (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * d/u/metadata: - Remove obsolete fields Contact, Name (already present in machine-readable debian/copyright). - Added registry entries . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-summarizedexperiment (1.20.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-summarizedexperiment (1.18.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-summarizedexperiment (1.18.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-summarizedexperiment (1.16.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-summarizedexperiment (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * Standards-Version: 4.4.1 r-bioc-summarizedexperiment (1.14.1+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * Set upstream metadata fields: Contact, Name. r-bioc-summarizedexperiment (1.14.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright r-bioc-summarizedexperiment (1.12.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-summarizedexperiment (1.10.1+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * Remove autogenerated HTML docs since it is including compressed JS r-bioc-summarizedexperiment (1.10.1-1) unstable; urgency=medium . * New upstream version r-bioc-summarizedexperiment (1.10.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-summarizedexperiment (1.10.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-summarizedexperiment (1.8.1-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * debhelper 11 r-bioc-summarizedexperiment (1.8.0-1) unstable; urgency=medium . * New upstream version * Bump versioned Build-Depends: r-bioc-genomicranges (>= 1.29.14), r-bioc-delayedarray (>= 0.3.20) * Secure URI in watch file r-bioc-summarizedexperiment (1.6.5-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * cme fix dpkg-control r-bioc-summarizedexperiment (1.6.3-1) unstable; urgency=medium . * Team upload * New upstream version * Add new Build-Depends: r-bioc-delayedarray r-bioc-summarizedexperiment (1.4.0-2) unstable; urgency=medium . * Exclude more parts of test suite which fail due to missing data package * debhelper 10 * d/watch: version=4 r-bioc-summarizedexperiment (1.4.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * New Build-Depends: r-cran-matrix * New versioned Build-Depends: r-bioc-s4vectors (>= 0.11.7), r-bioc-iranges (>= 2.7.2), r-bioc-summarizedexperiment (1.2.0-1) unstable; urgency=medium . * New upstream version * Fix versioned Depends r-bioc-summarizedexperiment (1.0.2-3) unstable; urgency=medium . * Skip test needing unpackaged database (thanks to Gordon Ball for the hint) r-bioc-summarizedexperiment (1.0.2-2) unstable; urgency=medium . * Add missing Depends to autopkgtest r-bioc-summarizedexperiment (1.0.2-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Fix dependencies of autopkgtest * Increased versioned Depends r-bioc-genomicranges r-bioc-summarizedexperiment (1.0.0-1) unstable; urgency=low . * Initial release (closes: #803616) r-bioc-sva (3.46.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) * Fix lintian-overrides syntax r-bioc-sva (3.44.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-sva (3.42.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-sva (3.40.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Add lintian-override * Provide autopkgtest-pkg-r.conf to make sure Test-Depends will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-sva (3.38.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-sva (3.36.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-sva (3.34.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-sva (3.34.0-1) unstable; urgency=medium . * Initial release (closes: #955739) r-bioc-tcgabiolinks (2.25.3+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-tcgabiolinks (2.24.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-tcgabiolinks (2.24.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-tcgabiolinks (2.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-tcgabiolinks (2.22.4+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-tcgabiolinks (2.22.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-tcgabiolinks (2.22.2+dfsg-2) unstable; urgency=medium . * Test-Depends: r-bioc-edaseq, r-cran-survminer, r-bioc-edger r-bioc-tcgabiolinks (2.22.2+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-tcgabiolinks (2.22.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-tcgabiolinks (2.20.1+dfsg-2) unstable; urgency=medium . * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-tcgabiolinks (2.20.1+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-tcgabiolinks (2.20.0+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-tcgabiolinks (2.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tcgabiolinks (2.16.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-tcgabiolinks (2.16.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Add r-bioc-edaseq, r-cran-survminer, r-bioc-edger to test-deps r-bioc-tcgabiolinks (2.16.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-tcgabiolinks (2.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tcgabiolinks (2.14.1+dfsg-2) unstable; urgency=medium . * Add missing copyright * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-tcgabiolinks (2.14.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #956246) r-bioc-tcgabiolinksgui.data (1.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tcgabiolinksgui.data (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-tcgabiolinksgui.data (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * Disable reprotest r-bioc-tcgabiolinksgui.data (1.12.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-tcgabiolinksgui.data (1.10.0+dfsg-2) unstable; urgency=medium . * Team upload. r-bioc-tcgabiolinksgui.data (1.10.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #973805) * debhelper-compat 13 (routine-update) r-bioc-tximport (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximport (1.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-tximport (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximport (1.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Disable reprotest * Ignore tests needing package tximportData but make sure test will raise signal once tximportData is available * Test-Depends: r-cran-readr r-bioc-tximport (1.18.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximport (1.16.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-tximport (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximport (1.14.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximport (1.14.0+dfsg-3) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-tximport (1.14.0+dfsg-2) unstable; urgency=medium . * Team upload. * Deactivate test since it needs tximportData which is about 0.5GB compressed data not yet packaged. Closes: #949281 * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Fix watch file r-bioc-tximport (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximport (1.12.3+dfsg-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.4.1 * Trim trailing whitespace. r-bioc-tximport (1.12.3+dfsg-1) unstable; urgency=medium . * Not shipping generated HTML file with embedded microsoft fonts and jquery a(scii)lob. r-bioc-tximportdata (1.26.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximportdata (1.24.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-tximportdata (1.22.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximportdata (1.20.0+ds-2) unstable; urgency=medium . * Team upload. * Disable reprotest * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-tximportdata (1.20.0+ds-1) unstable; urgency=medium . * Team upload. * Initial release (closes: #993472) r-bioc-wrench (1.16.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-wrench (1.14.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-wrench (1.12.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.12.0+dfsg r-bioc-wrench (1.10.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-wrench (1.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-wrench (1.6.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-wrench (1.4.0+dfsg-2) unstable; urgency=medium . * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-wrench (1.4.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #955274) r-bioc-xvector (0.38.0-1) unstable; urgency=medium . * New upstream version r-bioc-xvector (0.36.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-xvector (0.34.0-1) unstable; urgency=medium . * Team upload. * New upstream version 0.34.0 r-bioc-xvector (0.32.0-1) unstable; urgency=medium . [ Steffen Moeller ] * Team upload. * New upstream version * d/u/metadata: Added ref to guix * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * watch file standard 4 (routine-update) . [ Andreas Tille ] * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-xvector (0.30.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-xvector (0.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. r-bioc-xvector (0.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-xvector (0.24.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-xvector (0.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-xvector (0.20.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-xvector (0.20.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Secure URI in watch file r-bioc-xvector (0.18.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * debhelper 10 r-bioc-xvector (0.16.0-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-xvector (0.14.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-xvector (0.12.0-2) unstable; urgency=medium . * Fix autopkgtest r-bioc-xvector (0.12.0-1) unstable; urgency=medium . * New upstream version * Fix versioned Depends * cme fix dpkg-control r-bioc-xvector (0.10.0-1) unstable; urgency=medium . * New upstream version * Use Debian packaged zlib r-bioc-xvector (0.8.0-1) unstable; urgency=medium . * New upstream version r-bioc-xvector (0.6.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-xvector (0.4.0-1) unstable; urgency=medium . * New upstream version * Versioned Build-Depends: r-bioc-iranges (>= 1.22.8) r-bioc-xvector (0.2.0-2) unstable; urgency=medium . [ Martin Pitt ] * debian/tests/control: Add missing r-cran-runit test dependency, and allow stderr output. Closes: #735537 . [ Andreas Tille ] * Standards-Version: 3.9.5 r-bioc-xvector (0.2.0-1) unstable; urgency=low . * Initial release (closes: #728799) r-bioc-zlibbioc (1.44.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-zlibbioc (1.42.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-zlibbioc (1.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * Disable reprotest r-bioc-zlibbioc (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-zlibbioc (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-zlibbioc (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-zlibbioc (1.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-zlibbioc (1.30.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-zlibbioc (1.28.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #915376) r-cran-alakazam (1.2.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Archive, Bug-Database, Repository. r-cran-alakazam (1.2.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.2.0 * d/control: Run cme r-cran-alakazam (1.1.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) r-cran-alakazam (1.0.2-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-cran-alakazam (1.0.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-cran-alakazam (1.0.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Update d/copyright r-cran-alakazam (0.3.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright r-cran-alakazam (0.2.11-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Section: gnu-r * Document binary data in README.source (removed lintian-override) r-cran-alakazam (0.2.10-1) unstable; urgency=medium . * Initial release (closes: #901668). r-cran-nmf (0.25-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-cran-nmf (0.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Disable reprotest r-cran-nmf (0.23.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Archive. r-cran-nmf (0.22.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) r-cran-nmf (0.21.0-3) unstable; urgency=medium . * Team upload. * Maintainer: Debian R Packages Maintainers * Point Vcs fields to salsa.debian.org * dh-update-R to update Build-Depends r-cran-nmf (0.21.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Team upload. * Convert to dh-r. * Bump debhelper compat to 11~. * Add Testsuite: autopkgtest-pkg-r. * Canonical URL CRAN homepage. * Bump Standards-Version to 4.1.3. * Add README.source about RData files. * Switch to https in d/copyright. . [ Andreas Tille ] * d/watch: No version mangling * New upstream version Closes: #879248 r-cran-nmf (0.20.6-1) unstable; urgency=low . * Initial release. (Closes: #829736) r-cran-rsclient (0.7-9-1) unstable; urgency=medium . * New upstream release . * debian/control: Set (Build-)Depends: to current R version * debian/control: Set Standards-Version: to current version * debian/control: Switch to virtual debhelper-compat (= 12) r-cran-shazam (1.1.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Set upstream metadata fields: Repository. r-cran-shazam (1.1.1-1) unstable; urgency=medium . * Team upload. * New upstream version 1.1.1 * Bump Standards-Version to 4.6.1 (no changes needed) * Add Versioned B-D and dep in acc with dh-update-R r-cran-shazam (1.1.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-cran-shazam (1.0.2-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-cran-shazam (1.0.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-cran-shazam (0.2.3-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) r-cran-shazam (0.2.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.4.1 * Trim trailing whitespace. * Set upstream metadata fields: Archive, Bug-Database. r-cran-shazam (0.2.1-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 r-cran-shazam (0.1.11-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright * Remove additional autopkgtest since upstream does not provide test files any more r-cran-shazam (0.1.10-1) unstable; urgency=medium . * Team upload. * New upstream version r-cran-shazam (0.1.9-2) unstable; urgency=medium . * Team upload. * Fixing Dependencies by running dh-update-R Closes: #908246 * Standards-Version: 4.2.1 * Section: gnu-r * Lintian override for false positive * Rewording to avoid wrong lintian suspicion r-cran-shazam (0.1.9-1) unstable; urgency=medium . * Initial release (closes: #901684). r-cran-tigger (1.0.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * debhelper-compat 13 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Set upstream metadata fields: Repository. r-cran-tigger (1.0.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Archive, Bug-Database. r-cran-tigger (0.4.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright r-cran-tigger (0.3.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-cran-tigger (0.3.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Section: gnu-r * Add README.source to explain binary files r-cran-tigger (0.2.11-1) unstable; urgency=medium . * Initial release (closes: #901673.) ruby-hoe (3.22.1+dfsg1-3) unstable; urgency=medium . * Team Upload. . [ Debian Janitor ] * Use secure URI in Homepage field. * Set field Upstream-Contact in debian/copyright. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Apply multi-arch hints. + ruby-hoe: Add :any qualifier for ruby dependency. . [ Daniel Leidert ] * Fix watch file . [ Nilesh Patra ] * Cherry-pick upstream patch to fix FTBFS with ruby3.1 (Closes: #1019630) * Use ${ruby:Depends} instead of depending directly on ruby ruby-mime-types (3.4.1-2) unstable; urgency=medium . * Team Upload. . [ Lucas Kanashiro ] * d/t/control: mark smoke-test as superficial . [ Nilesh Patra ] * Add test-deps on self and ruby (Closes: #1025200) rust-oxilangtag (0.1.3-3) unstable; urgency=medium . * fix autopkgtest dependencies * stop superfluously provide virtual packages for zero- and full-versioned features * merge virtual feature package into main binary package * update dh-cargo fork * update copyright info: update coverage rust-oxilangtag (0.1.3-2) unstable; urgency=medium . * tighten autopkgtest dependencies * update dh-cargo fork * fix build-depend on librust-criterion-0.3+default-dev librust-serde-test-1+default-dev * tidy lintian overrides * fix typo in autopkgtest dependencies rust-oxilangtag (0.1.3-1) unstable; urgency=medium . * initial packaging release; closes: bug#1013354 rust-prometheus (0.13.3-1) unstable; urgency=medium . * Team upload. * Package prometheus 0.13.3 from crates.io using debcargo 2.6.0 * Relax dev-dependency on criterion. rust-prometheus (0.13.0-2) unstable; urgency=medium . * Team upload. * Source upload * Package prometheus 0.13.0 from crates.io using debcargo 2.5.0 rust-prometheus (0.13.0-1) unstable; urgency=medium . * Package prometheus 0.13.0 from crates.io using debcargo 2.5.0 rust-tesseract-sys (0.5.14-1) unstable; urgency=medium . [ upstream ] * new release . [ Jonas Smedegaard ] * bump version for provided virtual packages and autopkgtest hints rust-ureq (2.5.0-4) unstable; urgency=medium . * fix autopkgtest for feature tls by also enabling feature native-certs rust-ureq (2.5.0-3) unstable; urgency=medium . * re-release for building with auto-builder rust-ureq (2.5.0-2) unstable; urgency=medium . * avoid metapackages, using the equivalent of debcargo setting collapse_features=true sddm-kcm (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). sphinxcontrib-autoprogram (0.1.7-3) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) * Adapt test to current output syllabipy (0.2-4) unstable; urgency=medium . [ Debian Janitor ] * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. * Update standards version to 4.6.1, no changes needed. systemsettings (4:5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). * Update build-deps and deps with the info from cmake. uefitool (0.28.0+A62-1) unstable; urgency=medium . * New upstream release * Add UEFIExtract (Closes: #980029) * Bump Standards-Version to 4.6.1 uglify-js (3.17.4-2) unstable; urgency=medium . [ Debian Janitor ] * apply multi-arch hints: add Multi-Arch: foreign uglify-js (3.17.4-1) unstable; urgency=medium . [ upstream ] * new release unrar-nonfree (1:6.2.2-2) unstable; urgency=medium . [ Graham Inggs ] * Mark one symbol optional for LTO . [ YOKOTA Hiroshi ] * Enable link time optimization (LTO) vanguards (0.3.1-2.3) unstable; urgency=medium . * Non-maintainer upload. * Remove irl from Uploaders (Closes: #970316) * Migrate to Python 3 (Closes: #932820) vanguards (0.3.1-2.2) unstable; urgency=medium . * Non-maintainer upload. * No source change upload to rebuild with debhelper 13.10. vanguards (0.3.1-2.1) unstable; urgency=medium . * Non-maintainer upload. * Clean up pytest cache and egg info in clean target. * Run testsuite with python 3 and adjust build-depends accordingly to get rid of build-depends on pypy-pytest (Closes: 962232) (thanks to Chris Lamb for the initial patch) vanguards (0.3.1-2) unstable; urgency=medium . [ Nicolas Braud-Santoni ] * debian/control: Fix Vcs-* metadata vanguards (0.3.1-1) unstable; urgency=medium . * New upstream version 0.3.1 vanguards (0.3.0-1) unstable; urgency=medium . [ Ana Custura ] * New upstream version 0.3.0 * Add myself to uploaders vanguards (0.2.2-1) unstable; urgency=medium . * New upstream version 0.2.2 * debian/control: - Explicitly depend on pypy-ipaddress (for some reason this is not picked up in the pypy:Depends) * debian/vanguards.service: - Restart vanguards if process exits to provide some resilience in the face of unforeseen fatal bugs vanguards (0.2.1-1) unstable; urgency=medium . * New upstream version 0.2.1. * Now uses manpage included upstream instead of a Debian specific one. * Installs new technical and security READMEs * Adds pypy-ipaddress as a new build dependency vanguards (0.1.1+git20180727.67539be-3) unstable; urgency=medium . * Change Python runtime to PyPy from CPython (Closes: #905087) vanguards (0.1.1+git20180727.67539be-2) unstable; urgency=medium . * Do not automatically enable or start vanguards: - tor can be unhappy when there is more than one controller. The script should be explicitly enabled and started by the user once installed. vanguards (0.1.1+git20180727.67539be-1) unstable; urgency=low . * Initial release (Closes: #904575) voltron (0.1.7+git20200109-3) unstable; urgency=medium . [ Debian Janitor ] * Remove constraints unnecessary since buster (oldstable): + Build-Depends: Drop versioned constraint on python3-all. xdg-desktop-portal-gtk (1.14.1-1) unstable; urgency=medium . * New upstream release - Functionally equivalent to 1.14.0-2 - Drop all patches, included in upstream release xdg-desktop-portal-gtk (1.14.0-2) unstable; urgency=medium . [ Debian Janitor ] * Update standards version to 4.6.1 (no changes needed) * Canonicalize case of Multi-Arch field * Remove constraints unnecessary since buster (oldstable): + Build-Depends: Drop versioned constraint on libglib2.0-dev and libgtk-3-dev. . [ Simon McVittie ] * d/watch: Adapt to Github web page changes * d/patches: Add translation updates from upstream * d/patches: Add bug fixes from upstream git, up to 1.14.0-19-g9702bac - printing, wallpaper: Fix some memory leaks - printing: Consistently include .desktop in the fallback app name - screencast: Fall back to desktop ID if we don't know the app name - appchooser: Fix a use-after-free - wallpaper: Handle errors storing images in the cache - email: Fix a crash if no addresses are provided - notification: Fix notifications for apps with no ID not appearing - screenshot: Report whether PickColor is implemented, if possible (this requires xdg-desktop-portal 1.15.0-3 at runtime) xdg-desktop-portal-kde (5.26.4-1) unstable; urgency=medium . [ Aurélien COUDERC ] * New upstream release (5.26.4). zigpy (0.52.1-1) unstable; urgency=medium . * New upstream version. * Build-depend on python3-async-timeout. * Bump minimum Python version. REMOVED: python-descartes 1.1.0-5