geary (43.0-1) unstable; urgency=medium . * New upstream release * Drop patches applied in new release * debian/control.in: Bump minimum glib, libhandy and meson * debian/control.in: Bump Standards-Version to 4.6.1 geary (40.0-7) unstable; urgency=medium . * Build-Depend on dbus-run-session & at-spi2-core to try to fix arm* * Revert setting NO_AT_BRIDGE=1 geary (40.0-6) unstable; urgency=medium . * debian/rules Set NO_AT_BRIDGE=1 to try to fix arm* build test error geary (40.0-5) unstable; urgency=medium . * Release to unstable . geary (40.0-4) experimental; urgency=medium . * Cherry-pick patch to fix build with the GNOME Settings patch * Build-Depend on libmessaging-menu . geary (40.0-3) experimental; urgency=medium . * Cherry-pick 2 patches to build with webkit 4.1 and libsoup3 * debian/control.in: Bump dependencies for the switch * Cherry-pick patch to adapt to new GNOME Settings app id * Cherry-pick patch to adapt to adwaita-icon-theme changes * Cherry-pick commit to fix tests with latest libxml2 (Closes: #1011907) geary (40.0-4) experimental; urgency=medium . * Cherry-pick patch to fix build with the GNOME Settings patch * Build-Depend on libmessaging-menu geary (40.0-3) experimental; urgency=medium . * Cherry-pick 2 patches to build with webkit 4.1 and libsoup3 * debian/control.in: Bump dependencies for the switch * Cherry-pick patch to adapt to new GNOME Settings app id * Cherry-pick patch to adapt to adwaita-icon-theme changes * Cherry-pick commit to fix tests with latest libxml2 (Closes: #1011907) geary (40.0-2) unstable; urgency=medium . [ Laurent Bigonville ] * d/p/Bump-client-test-timeout-to-300s.patch: Increase the timeout for the engine-tests test too * debian/control.in: Bump valac BD to 0.48.11 . [ Jeremy Bicha ] * Add patch to support GNOME 42 dark theme preference * Cherry-pick 2 patches to fix build with latest vala * debian/control.in: Bump minimum libhandy to 1.5.90 for the dark theme pref geary (40.0-1) unstable; urgency=medium . * New upstream release (Closes: #987600) - Adjust the build-dependencies and configure options - debian/patches/Bump-client-test-timeout-to-300s.patch: Refreshed * debian/watch: Updated to follow new version scheme * debian/rules: Also disable tnef support on ppc64 * debian/rules: Run the tests verbosely and sequentially to ease troubleshooting geary (3.38.2-1) unstable; urgency=medium . * New upstream release geary (3.38.1-1) unstable; urgency=medium . * New upstream release (Closes: #972520, #970933) * debian/control.in: The Provides stanza must be in the binary package part, not the source one geary (3.38.0.1-3) unstable; urgency=medium . * Updated the list of documentation files to install geary (3.38.0.1-2) unstable; urgency=medium . * debian/control.in: the tests also require librsvg geary (3.38.0.1-1) unstable; urgency=medium . * New upstream release * debian/control.in: - Build-Depends on gnutls-bin required for the tests - build using libgsound-dev - updated libglib, libhandy, valac requirements * debian/rules: - strip Ubuntu -Bsymbolic-functions, the tests are failing otherwise geary (3.36.2-1) unstable; urgency=medium . * New upstream release * drop patches adopted upstream, refresh remaining patch * drop --as-needed from linker flags (no longer needed in bullseye) * move to debhelper 13 geary (3.36.1-1) unstable; urgency=medium . * New upstream release * most patches already adopted upstream * ensure client library lives in dedicated location * avoid embedding git description in built binary geary (3.36.0-2) unstable; urgency=medium . * try to fix memory overallocation on 64-bit BE arches * avoid linking to libytnef on s390x as well geary (3.36.0-1) unstable; urgency=medium . * New upstream release * move back to debian/master branch (release to unstable) * refresh patches * Fix Avatar test on powerpc * drop unused lintian-overrides * disable ytnef on powerpc geary (3.35.90-3) experimental; urgency=medium . * Test suite should run with LC_COLLATE=en_US.UTF-8 geary (3.35.90-2) experimental; urgency=medium . * added a build-dep on locales for the test suite geary (3.35.90-1) experimental; urgency=medium . [ Pirate Praveen ] * Update minimum version of valac to 0.46.3 . [ Daniel Kahn Gillmor ] * New upstream development release to experimental * update build-dependencies to include gmime 3.0 and libpeas (Closes: #867349) * update build-dependencies, tracking upstream meson.build * d/copyright: drop Files-Excluded (upstream no longer ships a copy of libhandy) * Rules-Requires-Root: no * Standards-Version: bump to 4.5.0 (no changes needed) * override unnecessary lintian warnings for source * add superficial "version" autopkgtest * clean up python cache during build * add Provides: imap-client, mail-reader (Closes: #928036) geary (3.34.2-1) unstable; urgency=medium . [ Jeremy Bicha ] * debian/watch: Watch for stable releases . [ Andreas Henriksson ] * Drop leftover gnome-doc-utils build-dependency . [ Laurent Bigonville ] * debian/control.in: Switch to enchant-2 now that's in the archive * debian/control.in: Bump Standards-Version to 4.4.1 (no further changes) * debian/copyright: Upstream is not shipping a debian/ directory anymore, removed obsolete Files-Excluded * New upstream release geary (3.34.1-4) unstable; urgency=medium . * Release to unstable (Closes: #940005, #940997, #934754) . geary (3.34.1-3) experimental; urgency=medium . * Update patch to increase timeout for client tests, not engine tests . geary (3.34.1-2) experimental; urgency=medium . [ Michael Gratton ] * Add Bump-engine-test-timeout-to-300s.patch: - Increase engine test timeout so tests pass on slower Debian builders . geary (3.34.1-1) experimental; urgency=medium . * New upstream release * Add subprojects/ to Files-Excluded to avoid code copying * Build-Depend on debhelper-compat 12 and drop debian/compat * Build-Depend on dh-sequence-gnome instead of gnome-pkg-tools * Build-Depend on libappstream-glib-dev, libgspell-1-dev, & libhandy-0.0-dev * Build-Depend on libytnef0-dev * Drop obsolete Build-Depends on libnotify-dev * Bump minimum meson to 0.50, GTK3 to 3.24.7, & webkit2gtk to 2.24 . geary (3.32.0-1) experimental; urgency=medium . * New upstream release * Build-Depend on libfolks-dev * Build-Depend on appstream-util for build tests . geary (0.13.1-1) experimental; urgency=medium . * New upstream release * Drop all patches: applied in new release . geary (0.13.0-2) experimental; urgency=medium . * Cherry-pick 2 commits that make libunwind optional * Only use libunwind on architectures where it is built . geary (0.13.0-1) experimental; urgency=medium . * New upstream development release * Build with meson * Bump minimum libglib2.0-dev to 2.54 and libgtk-3-dev to 3.22.26 * Add Build-Depends on libgoa-1.0-dev, libjson-glib-dev, libunwind-dev and iso-codes * Use xvfb for dh_auto_test * Drop all patches: applied in new release geary (3.34.1-3) experimental; urgency=medium . * Update patch to increase timeout for client tests, not engine tests geary (3.34.1-2) experimental; urgency=medium . [ Michael Gratton ] * Add Bump-engine-test-timeout-to-300s.patch: - Increase engine test timeout so tests pass on slower Debian builders geary (3.34.1-1) experimental; urgency=medium . * New upstream release * Add subprojects/ to Files-Excluded to avoid code copying * Build-Depend on debhelper-compat 12 and drop debian/compat * Build-Depend on dh-sequence-gnome instead of gnome-pkg-tools * Build-Depend on libappstream-glib-dev, libgspell-1-dev, & libhandy-0.0-dev * Build-Depend on libytnef0-dev * Drop obsolete Build-Depends on libnotify-dev * Bump minimum meson to 0.50, GTK3 to 3.24.7, & webkit2gtk to 2.24 geary (3.32.0-1) experimental; urgency=medium . * New upstream release * Build-Depend on libfolks-dev * Build-Depend on appstream-util for build tests geary (0.13.1-1) experimental; urgency=medium . * New upstream release * Drop all patches: applied in new release geary (0.13.0-2) experimental; urgency=medium . * Cherry-pick 2 commits that make libunwind optional * Only use libunwind on architectures where it is built geary (0.13.0-1) experimental; urgency=medium . * New upstream development release * Build with meson * Bump minimum libglib2.0-dev to 2.54 and libgtk-3-dev to 3.22.26 * Add Build-Depends on libgoa-1.0-dev, libjson-glib-dev, libunwind-dev and iso-codes * Use xvfb for dh_auto_test * Drop all patches: applied in new release geary (0.12.4-4) unstable; urgency=medium . * Cherry-pick Actually-use-error-variable.patch: - Fix build with latest vala geary (0.12.4-3) unstable; urgency=medium . * Add -Wl,-O1 to our LDFLAGS * Bump Standards-Version to 4.3.0 geary (0.12.4-2) unstable; urgency=medium . * Cherry-pick 3 patches to fix build with webkit2gtk 2.22 * Bump minimum libwebkit2gtk-4.0-dev to 2.22 geary (0.12.4-1) unstable; urgency=medium . * New upstream release (Closes: #904387, #907942) * Opt in to Ubuntu language packs (LP: #1779574) * Bump Standards-Version to 4.2.1 geary (0.12.2-2) unstable; urgency=medium . * Adjust ugly hack to use linux-firmware-free instead of openrc * Bump Standards-Version to 4.1.4 geary (0.12.2-1) unstable; urgency=medium . * New upstream release * Use an ugly hack to build-depend on libmessaging-menu-dev and libunity-dev on Ubuntu but not on Debian since those packages don't exist in Debian. geary (0.12.1-1) unstable; urgency=medium . [ Jeremy Bicha ] * New upstream release . [ Simon McVittie ] * Update Vcs-* for migration from collab-maint svn to GNOME git * debian/gbp.conf: Add geary (0.12.0-1) unstable; urgency=medium . * Change maintainer to Debian GNOME Team, with Vincent's permission * Drop obsolete Build-Depends on libgnome-keyring-dev (Closes: #867922) * Bump debhelper compat to 11 * Bump Standards-Version to 4.1.3 geary (0.12.0-0.1) unstable; urgency=medium . * Non-maintainer upload. * New upstream release (Closes: #879574) * Drop vavala-casts.patch, applied in new release geary (0.12~20170915-0.4) unstable; urgency=medium . * Non-maintainer upload. * Add patch to debian/patches/series geary (0.12~20170915-0.3) unstable; urgency=medium . * Non-maintainer upload. * Actually add patch. geary (0.12~20170915-0.2) unstable; urgency=medium . * Non-maintainer upload. * Add vavala-casts.patch to fix build on s390x geary (0.12~20170915-0.1) unstable; urgency=medium . * Non-maintainer upload. * New upstream git snapshot (Closes: #873863) * Switch to webkit2gtk (Closes: #866638) (LP: #1588150) * debian/control: - Build-depend on libenchant-dev - Bump minimum GTK+ to 3.14 and GLib to 2.42 geary (0.11.3-1) unstable; urgency=medium . * New upstream release. geary (0.11.2-2) unstable; urgency=medium . * Fix FTBFS by not treating Vala warnings as fatal errors. (Closes: #839324) geary (0.11.2-1) unstable; urgency=medium . * New upstream release. geary (0.11.1-1) unstable; urgency=medium . * New upstream release. geary (0.11.0-2) unstable; urgency=medium . * Drop obsolete libunique-3.0-dev build-dep. (Closes: #824575) geary (0.11.0-1) unstable; urgency=medium . * New upstream release. * Bump Standards-Version to 3.9.8. - Drop obsolete debian/menu file. * Update debian/copyright. geary (0.10.0-1) unstable; urgency=medium . * New upstream release. (Closes: #782594) geary (0.8.3-1) unstable; urgency=medium . * New upstream release. geary (0.8.2-1) unstable; urgency=medium . * New upstream release. geary (0.8.1-1) unstable; urgency=medium . * New upstream release. - Restrict build-dep on libgcr-3-dev to >= 3.10.1. * Bump Standards-Version to 3.9.6. geary (0.8.0-1) unstable; urgency=medium . * New upstream release. geary (0.6.3-1) unstable; urgency=medium . * New upstream release. - Warn user of TLS certificate issues when connecting. (Closes: #703975; LP: #1158859) * Add build-depends on libgcr-3-dev. geary (0.6.2-1) unstable; urgency=medium . * New upstream release. geary (0.6.1-1) unstable; urgency=medium . * New upstream release. geary (0.6.0-3) unstable; urgency=medium . * Replace dependency on kwallet (which doesn't exist) with kwalletmanager. geary (0.6.0-2) unstable; urgency=medium . * Add dependency on gnome-keyring | kwallet. (Closes: #752888) geary (0.6.0-1) unstable; urgency=medium . * Adopt package. (Closes: #752319) * New upstream release. (Closes: #742213) - Added build-deps: libxml2-dev, gnome-doc-utils. * Update debian/copyright with missing license/copyright entries. * Add Vcs-* fields in debian/control. (Closes: #703968) * Update watch file. (Closes: #743742) * Import apport-related files from Ubuntu. * Priority changed from extra -> optional. * Updated Homepage field in debian/control. geary (0.4.2-1) unstable; urgency=low . * Upload to unstable. * New upstream release (Closes: #703964). * debian/control: update Build-Depends field to match new minimum requirements (Closes: #711395). * Update debian/copyright file. * Bump Standards-Version to 3.9.5. geary (0.3.1-1) experimental; urgency=low . * New upstream release (Closes: #703953). * Update debian/copyright file. geary (0.2.2-1) experimental; urgency=low . * Initial release (Closes: #671857). r-bioc-ballgown (2.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-ballgown (2.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-ballgown (2.26.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Re-add Build-Depends: r-cran-knitr and r-cran-markdown to recreate doc r-bioc-ballgown (2.24.0+dfsg-1) unstable; urgency=medium . * Team Upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * d/control: Remove myself from uploaders, add Andreas instead r-bioc-ballgown (2.22.0+dfsg-2) unstable; urgency=medium . * Source-only Upload. r-bioc-ballgown (2.22.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #986295) r-bioc-biovizbase (1.46.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-biovizbase (1.44.0-1) unstable; urgency=medium . * Drop unused lintian-override * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-biovizbase (1.42.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-biovizbase (1.40.0-2) unstable; urgency=medium . * Disable reprotest * Do not run autodep8 since it needs unpackaged data r-bioc-biovizbase (1.40.0-1) unstable; urgency=medium . * No need to use vignette for autopkgtest since real test is provided * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * lintian-override: No need to link against libc r-bioc-biovizbase (1.38.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * No tab in license text (routine-update) r-bioc-biovizbase (1.36.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biovizbase (1.34.1-2) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-biovizbase (1.34.1-1) unstable; urgency=medium . * New upstream version r-bioc-biovizbase (1.34.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-biovizbase (1.32.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-biovizbase (1.30.1-1) unstable; urgency=medium . * New upstream version r-bioc-biovizbase (1.30.0-2) unstable; urgency=medium . * Team upload. * Do not call sessionInfo() while building vignettes, it fails on low-memory autopkgtesters. r-bioc-biovizbase (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-biovizbase (1.28.2-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-biovizbase (1.28.1-1) unstable; urgency=medium . * Remove now unneeded Build-Depends r-cran-foreign and r-cran-nnet (see #900974) * New upstream version * dh-update-R to update Build-Depends r-bioc-biovizbase (1.28.0-2) unstable; urgency=medium . * Force r-cran-foreign and r-cran-nnet also in Depends since it is obviously needed - at least the issue re-appears when trying to build r-bioc-gviz and probably also in autopkgtest r-bioc-biovizbase (1.28.0-1) unstable; urgency=medium . * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Re-add Build-Depends: r-cran-foreign, r-cran-nnet which was erroneously removed by dh-update-R * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * Fix Maintainer and Vcs-fields * Rebuild for R 3.5 transition r-bioc-biovizbase (1.26.0-1) unstable; urgency=medium . * New upstream version r-bioc-biovizbase (1.24.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Versioned Build-Depends: r-bioc-ensembldb (>= 1.99.13) * Secure URI in watch file r-bioc-biovizbase (1.22.0-2) unstable; urgency=medium . * Add missing test dependency: r-cran-foreign, r-cran-nnet * debhelper 10 * d/watch: version=4 r-bioc-biovizbase (1.22.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-biovizbase (1.20.0-1) unstable; urgency=medium . * New upstream version * New (Build-)Depends: r-bioc-ensembldb r-bioc-biovizbase (1.18.0-2) unstable; urgency=medium . * Fix test suite * cme fix dpkg-control r-bioc-biovizbase (1.18.0-1) unstable; urgency=medium . * New upstream version r-bioc-biovizbase (1.16.0-1) unstable; urgency=medium . * New upstream version r-bioc-biovizbase (1.14.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * Adapted dependencies r-bioc-biovizbase (1.12.3-1) unstable; urgency=medium . * New upstream version * New (build-)dependencies: r-cran-foreign, r-cran-nnet * Add autopkgtest based on vignettes r-bioc-biovizbase (1.12.1-1) unstable; urgency=medium . * New upstream release Closes: #753217 * Add new (Build-)Dependencies: r-bioc-genomicalignments, r-bioc-variantannotation r-bioc-biovizbase (1.10.7-1) unstable; urgency=low . * Initial release (closes: #733527) r-bioc-bsgenome (1.66.1-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-bsgenome (1.64.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-bioc-bsgenome (1.62.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-genomeinfodb and r-bioc-xvector. r-bioc-bsgenome (1.60.0-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-biocgenerics, r-bioc-biostrings, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rtracklayer, r-bioc-s4vectors and r-bioc-xvector. . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-bsgenome (1.58.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * No tab in license text (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-bsgenome (1.56.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-bsgenome (1.54.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-bsgenome (1.52.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 r-bioc-bsgenome (1.50.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-bsgenome (1.48.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends r-bioc-bsgenome (1.48.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-bsgenome (1.48.0-1) unstable; urgency=medium . [ Graham Inggs ] * New Build-Depends: r-bioc-genomicranges (>= 1.29.14) . [ Andreas Tille ] * New upstream version * debhelper 11 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-bsgenome (1.46.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-bsgenome (1.44.2-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-bsgenome (1.44.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) * Remove unneeded lintian-overrides r-bioc-bsgenome (1.42.0-2) unstable; urgency=medium . * Rebuild against libssl1.0.2 from unstable r-bioc-bsgenome (1.42.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-bsgenome (1.40.0-1) unstable; urgency=medium . * New upstream version r-bioc-bsgenome (1.38.0-2) unstable; urgency=medium . * Fix autopkgtest * cme fix dpkg-control r-bioc-bsgenome (1.38.0-1) unstable; urgency=medium . * New upstream version r-bioc-bsgenome (1.36.3-1) unstable; urgency=medium . * New upstream version * fix watch file * lintian-overrides for package-contains-timestamped-gzip r-bioc-bsgenome (1.36.2-1) unstable; urgency=medium . * New upstream version r-bioc-bsgenome (1.36.1-1) unstable; urgency=medium . * New upstream version r-bioc-bsgenome (1.34.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * Add autopkgtest r-bioc-bsgenome (1.32.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * add new (Build-)Depends: r-bioc-rsamtools (>= 1.15) * package is architecture "all" r-bioc-bsgenome (1.30.0-1) unstable; urgency=low . * New upstream version * Add lintian-overrides r-bioc-bsgenome (1.28.0-1) unstable; urgency=low . * Initial release (closes: #728277) r-bioc-cner (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-cner (1.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-cner (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-cner (1.28.0+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on dh-r, r-bioc-biostrings, r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-xvector, r-cran-ggplot2 and r-cran-reshape2. . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-cner (1.26.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-cner (1.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-cner (1.22.0+dfsg-2) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-cner (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-cner (1.20.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * rename debian/tests/control.autodep8 to debian/tests/control * Deactivated autopkgtest since the needed data packages are not available r-bioc-cner (1.18.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends r-bioc-cner (1.16.1+dfsg-1) unstable; urgency=medium . * Initial release (closes: #900412) r-bioc-cummerbund (2.40.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-cummerbund (2.38.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-cummerbund (2.36.0-1) unstable; urgency=medium . * Team upload. * [9f8382e] New upstream version 2.36.0 r-bioc-cummerbund (2.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-cummerbund (2.32.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-cummerbund (2.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-cummerbund (2.28.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g * Remove obsolete fields Name from debian/upstream/metadata. r-bioc-cummerbund (2.26.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright r-bioc-cummerbund (2.24.0-2) unstable; urgency=medium . * Team upload * Do not call sessionInfo() while building vignettes, it fails on low-memory autopkgtesters r-bioc-cummerbund (2.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-cummerbund (2.22.0-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * New upstream version * debhelper 11 * Maintainer: Debian R Packages Maintainers * Point Vcs fields to salsa.debian.org * dh-update-R to update Build-Depends r-bioc-cummerbund (2.20.0-1) unstable; urgency=medium . * New upstream version * Add Registry entry r-bioc-cummerbund (2.18.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file * Standards-Version: 4.1.1 * debhelper 10 * Add debian/README.source to document binary data files r-bioc-cummerbund (2.16.0-3) unstable; urgency=medium . * Team upload. * Rebuild for r-api-3.4 transition. r-bioc-cummerbund (2.16.0-2) unstable; urgency=medium . * Build-Depends: r-cran-foreign, r-cran-nnet Closes: #842914 r-bioc-cummerbund (2.16.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-cummerbund (2.14.0-2) unstable; urgency=medium . * Fixed autopkgtest (thanks to Gordon Ball) r-bioc-cummerbund (2.14.0-1) unstable; urgency=medium . * New upstream version r-bioc-cummerbund (2.12.1-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * (hopefully) fix autopkgtest r-bioc-cummerbund (2.12.0-1) unstable; urgency=medium . * New upstream version Closes: #803567 r-bioc-cummerbund (2.10.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Update dependencies * Update copyright info * Add autopkgtest based on vignettes r-bioc-cummerbund (2.6.1-1) unstable; urgency=low . * New upstream version Closes: #753193 * Drop Carlos Borroto from Uploaders at his request * Moved debian/upstream to debian/upstream/metadata r-bioc-cummerbund (2.4.1-1) unstable; urgency=low . * New upstream version * debian/rules: Remove useless creation of ${R-Depends} * debian/control: Versioned Build-Depends: r-base-dev (>= 3.0) * debian/README.test: add hint how to test the package r-bioc-cummerbund (1.2.0-2) unstable; urgency=low . [ Charles Plessy ] f419ef1 Normalised VCS URLs following Lintian's standard. d5c4363 Removed obsolete DM-Upload-Allowed field. 6982298 Normalised Debian copyright file with 'cme fix dpkg-copyright'. 38bee3c Normalised debian/control with 'cme fix dpkg-copyright'. 9587f21 Use Debhelper 9. 9560362 Conforms with Policy 3.9.4. . [ Andreas Tille ] * Upload to unstable after verifying that predepends are properly build r-bioc-cummerbund (1.2.0-1) unstable; urgency=low * New upstream release * debian/watch: Track stable releases instead of development releases * debian/upstream: Reference as given in citation("cummeRbund") * debian/control: Standards-Version: 3.9.3 (no changes needed) * debian/rules: Enable hardening r-bioc-cummerbund (1.1.3-1) unstable; urgency=low * Initial release (Closes: #657997) r-bioc-degnorm (1.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-degnorm (1.6.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-degnorm (1.6.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-degnorm (1.4.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-degnorm (1.2.0+ds-2) unstable; urgency=medium . * Team upload. * Source-only upload r-bioc-degnorm (1.2.0+ds-1) unstable; urgency=medium . * Initial release (closes: #992630) r-bioc-edaseq (2.32.0+dfsg-2) unstable; urgency=medium . * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-edaseq (2.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-edaseq (2.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-edaseq (2.28.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-edaseq (2.26.1+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-edaseq (2.24.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-edaseq (2.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Trim trailing whitespace. r-bioc-edaseq (2.20.0+dfsg-2) unstable; urgency=medium . * Source only upload. r-bioc-edaseq (2.20.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #955735) r-bioc-ensembldb (2.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-ensembldb (2.20.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-ensembldb (2.20.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-ensembldb (2.18.4+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-ensembldb (2.18.3+dfsg-1) unstable; urgency=medium . * New upstream version * Add missing build dependency on dh addon. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Skip autopkgtest * Disable reprotest r-bioc-ensembldb (2.18.2+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-ensembldb (2.16.4+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-annotationdbi, r-bioc-biocgenerics, r-bioc-biostrings, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-iranges, r-bioc-s4vectors and r-cran-rsqlite. . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-ensembldb (2.14.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * No tab in license text (routine-update) * Set upstream metadata fields: Bug-Submit, Repository. r-bioc-ensembldb (2.12.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ensembldb (2.10.2+dfsg-2) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-ensembldb (2.10.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ensembldb (2.10.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * debian/copyright: Use spaces rather than tabs in continuation lines. * Set upstream metadata fields: Bug-Database, Repository. r-bioc-ensembldb (2.8.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-ensembldb (2.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.4.0 r-bioc-ensembldb (2.6.5+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ensembldb (2.6.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/copyright r-bioc-ensembldb (2.6.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ensembldb (2.6.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ensembldb (2.6.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-ensembldb (2.4.1+dfsg-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * Remove autogenerated HTML docs since it is including compressed JS r-bioc-ensembldb (2.4.1-1) unstable; urgency=medium . * New upstream version r-bioc-ensembldb (2.4.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-ensembldb (2.4.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-ensembldb (2.2.2-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * debhelper 11 r-bioc-ensembldb (2.2.0-2) unstable; urgency=medium . * Upstream switched from unittests to testthat but now even testthat.R importet dataset EnsDb.Hsapiens.v75 which is not packaged. So switch back to basic `Testsuite: autopkgtest-pkg-r` for autopkgtest Closes: #882355 r-bioc-ensembldb (2.2.0-1) unstable; urgency=medium . * New upstream version * New versioned Build-Depends: r-bioc-genomicfeatures (>= 1.29.10), r-bioc-annotationfilter (>= 1.1.9) r-bioc-ensembldb (2.0.4-1) unstable; urgency=medium . * New upstream version * No need to Build-Depend: r-base-dev * New Build-Depends: r-bioc-annotationfilter, r-bioc-protgenerics * Add debian/README.source to document binary data files * Add shebang line to perl script * Script makeEnsemblDbPackage.R not distributed any more thus remove it from d/copyright * Secure URI in watch file r-bioc-ensembldb (1.6.2-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-ensembldb (1.6.2-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-ensembldb (1.6.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage * Exclude tests requiring EnsDb.Hsapiens.v75 from unit tests r-bioc-ensembldb (1.4.6-1) unstable; urgency=low . * Initial release (closes: #825906) r-bioc-genelendatabase (1.34.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-genelendatabase (1.32.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-genelendatabase (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-genelendatabase (1.28.0-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-genelendatabase (1.26.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-genelendatabase (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-genelendatabase (1.22.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-genelendatabase (1.22.0-1) unstable; urgency=medium . * Initial release (closes: #954989) r-bioc-genomicfeatures (1.50.2+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) r-bioc-genomicfeatures (1.48.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.48.3+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.48.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-genomicfeatures (1.48.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.48.0+dfsg * Exclude and regenerate html doc r-bioc-genomicfeatures (1.46.5+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.46.4+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.46.3+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Skip autopkgtest and mark it superficial * Disable reprotest r-bioc-genomicfeatures (1.46.1+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-genomeinfodb. r-bioc-genomicfeatures (1.44.2+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-annotationdbi, r-bioc-biostrings, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-iranges, r-bioc-s4vectors, r-bioc-xvector and r-cran-rsqlite. . [ Nilesh Patra ] * Add versioned scheme on several B-D, as per DESCRIPTION file, add B-D on r-bioc-biocio r-bioc-genomicfeatures (1.42.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Remove trailing whitespace in debian/rules (routine-update) r-bioc-genomicfeatures (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.40.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-genomicfeatures (1.40.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-genomicfeatures (1.38.2+dfsg-2) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-genomicfeatures (1.38.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-genomicfeatures (1.38.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) r-bioc-genomicfeatures (1.38.0+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-genomicfeatures (1.36.4+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.4.0 * Autopkgtest is deactivated anyway so there is no need to patch the tests * Remove trailing whitespace in debian/copyright r-bioc-genomicfeatures (1.34.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-genomicfeatures (1.34.2+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.3.0 r-bioc-genomicfeatures (1.34.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-genomicfeatures (1.32.3+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-genomicfeatures (1.32.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.32.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.0 r-bioc-genomicfeatures (1.32.0+dfsg-3) unstable; urgency=medium . * Rebuild for R 3.5 transition r-bioc-genomicfeatures (1.32.0+dfsg-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-genomicfeatures (1.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-genomicfeatures (1.30.3+dfsg-1) unstable; urgency=medium . [ Graham Inggs ] * New Build-Depends: r-bioc-genomicranges (>= 1.29.14) . [ Andreas Tille ] * New upstream version * Standards-Version: 4.1.3 * debhelper 11 r-bioc-genomicfeatures (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file * New Build-Depends: r-cran-rmysql r-bioc-genomicfeatures (1.28.5+dfsg-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Testsuite: autopkgtest-pkg-r r-bioc-genomicfeatures (1.28.4+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.0 (no changes needed) * Versioned Build-Depends: r-cran-rsqlite (>= 2.0) * Remove external Rda data files r-bioc-genomicfeatures (1.28.0-1) unstable; urgency=medium . * Team upload * New upstream version r-bioc-genomicfeatures (1.26.2-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-genomicfeatures (1.26.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-genomicfeatures (1.24.1-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.24.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-genomicfeatures (1.22.4-1) unstable; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.20.5-1) unstable; urgency=medium . * New upstream version * Fixed watch file r-bioc-genomicfeatures (1.20.1-1) unstable; urgency=medium . * New upstream version * drop autotest since it needs external data r-bioc-genomicfeatures (1.18.1-1) experimental; urgency=medium . * New upstream version r-bioc-genomicfeatures (1.18.0-1) experimental; urgency=medium . * New upstream version * Updated versioned dependencies r-bioc-genomicfeatures (1.16.3-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-genomicfeatures (1.16.2-1) unstable; urgency=medium . [ Martin Pitt ] * debian/tests/control: Add missing r-cran-runit test dependency, and allow stderr output. . [ Andreas Tille ] * New upstream version * (Build-)Depends: r-bioc-genomeinfodb * Add citation * Make test independent from TxDb.Hsapiens.UCSC.hg19.knownGene Closes: #735548 r-bioc-genomicfeatures (1.14.2-1) unstable; urgency=low . * Initial release (closes: #733329) r-bioc-genomicfiles (1.34.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-genomicfiles (1.32.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-genomicfiles (1.30.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-genomicfiles (1.28.0-2) unstable; urgency=medium . * Team upload. * Provide autopkgtest-pkg-r.conf to make sure RUnit will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Disable reprotest r-bioc-genomicfiles (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-genomicfiles (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-genomicfiles (1.24.0-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Trim trailing whitespace. r-bioc-genomicfiles (1.24.0-1) unstable; urgency=medium . * Initial release (closes: #969061) r-bioc-ggbio (1.46.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-ggbio (1.44.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-ggbio (1.44.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-ggbio (1.42.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.42.0 r-bioc-ggbio (1.40.0-2) unstable; urgency=medium . * Team upload. * Add test-dep on r-bioc-organismdbi r-bioc-ggbio (1.40.0-1) unstable; urgency=medium . * Initial release (closes: #992709) r-bioc-goseq (1.50.0-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-goseq (1.48.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-goseq (1.46.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version r-bioc-goseq (1.44.0-1) unstable; urgency=medium . [ Steffen Moeller ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Added d/u/metadata . [ Andreas Tille ] * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-goseq (1.42.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-goseq (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Trim trailing whitespace. r-bioc-goseq (1.38.0-2) unstable; urgency=medium . * Source only upload r-bioc-goseq (1.38.0-1) unstable; urgency=medium . * Initial release (closes: #955138) r-bioc-grohmm (1.32.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-grohmm (1.30.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Remove trailing whitespace in debian/changelog (routine-update) * Drop S.h patch now applied upstream r-bioc-grohmm (1.29.1-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) . [ Nilesh Patra ] * Remove S.h includes r-bioc-grohmm (1.28.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-grohmm (1.26.0-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-genomicalignments, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rtracklayer and r-bioc-s4vectors. . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-grohmm (1.24.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-grohmm (1.22.0-2) unstable; urgency=medium . * Team upload. * debhelper-compat 13 (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-grohmm (1.22.0-1) unstable; urgency=medium . * Initial release (closes: #962661) r-bioc-gviz (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-gviz (1.40.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-gviz (1.38.3+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-gviz (1.38.2+dfsg-2) unstable; urgency=medium . * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-gviz (1.38.2+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Add missing build dependency on dh addon. r-bioc-gviz (1.38.1+dfsg-1) unstable; urgency=medium . * New upstream version * Add missing build dependency on dh addon. r-bioc-gviz (1.38.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.38.0+dfsg * d/control: Run dh-update-R r-bioc-gviz (1.36.2+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-gviz (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) r-bioc-gviz (1.32.0+dfsg-2) unstable; urgency=medium . * Team upload. * Add patch to skip tests requiring package not available in Debian. (Closes: #961592) r-bioc-gviz (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-gviz (1.30.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gviz (1.30.1+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Submit, Repository. r-bioc-gviz (1.30.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.4.1 * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g * debian/copyright: Use spaces rather than tabs in continuation lines. r-bioc-gviz (1.28.3+dfsg-1) unstable; urgency=medium . * New upstream version * Set upstream metadata fields: Bug-Database, Repository. r-bioc-gviz (1.28.1+dfsg-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 r-bioc-gviz (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove autogenerated HTML docs since it is including compressed JS r-bioc-gviz (1.26.4-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gviz (1.26.3-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gviz (1.26.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-gviz (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright r-bioc-gviz (1.24.0-1) unstable; urgency=medium . * New upstream version * Maintainer: Debian R Packages Maintainers * Point Vcs fields to salsa.debian.org * dh-update-R to update Build-Depends r-bioc-gviz (1.22.3-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.3 * debhelper 11 r-bioc-gviz (1.22.0-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file * Standards-Version: 4.1.1 * Testsuite: autopkgtest-pkg-r r-bioc-gviz (1.20.0-2) unstable; urgency=medium . * Team upload. * Rebuild for r-api-3.4 transition. r-bioc-gviz (1.20.0-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.0 (no changes needed) r-bioc-gviz (1.18.1-2) unstable; urgency=medium . * block network access during package build Closes: #862039 r-bioc-gviz (1.18.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-gviz (1.18.0-2) unstable; urgency=medium . * Build-Depends: r-cran-foreign, r-cran-nnet Closes: #842915 r-bioc-gviz (1.18.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-gviz (1.16.4-1) unstable; urgency=medium . * New upstream version r-bioc-gviz (1.16.1-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-gviz (1.14.0-1) unstable; urgency=medium . * New upstream version r-bioc-gviz (1.12.1-1) unstable; urgency=medium . * New upstream version r-bioc-gviz (1.10.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-gviz (1.8.4-1) unstable; urgency=medium . * New upstream version * Add better advise how the package can be tested r-bioc-gviz (1.8.3-1) unstable; urgency=medium . * New upstream version * Moved debian/upstream to debian/upstream/metadata * (Build-)Depends: r-bioc-genomicalignments, r-bioc-genomicfeatures (>= 1.16.2-1), r-cran-matrixstats r-bioc-gviz (1.6.0-1) unstable; urgency=low . * Initial release (closes: #733720) r-bioc-isoformswitchanalyzer (1.20.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Reduce piuparts noise in transitions (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. r-bioc-isoformswitchanalyzer (1.18.0+ds-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.18.0+ds r-bioc-isoformswitchanalyzer (1.16.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version 1.16.0+ds * d/control: Run dh-update-R * Add B-D on r-cran-drimseq (Closes: #999632) r-bioc-isoformswitchanalyzer (1.14.0+ds-1) unstable; urgency=medium . * Initial release (closes: #995255) r-bioc-mutationalpatterns (3.8.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-mutationalpatterns (3.6.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-mutationalpatterns (3.4.1+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-mutationalpatterns (3.4.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-mutationalpatterns (3.2.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) r-bioc-mutationalpatterns (3.0.1+dfsg-2) unstable; urgency=medium . * Add hook to deal with unavailable BioC packages in test Closes: #983027 r-bioc-mutationalpatterns (3.0.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor r-bioc-mutationalpatterns (3.0.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Delete patch that does not apply. Autopkgtest is deactivated anyway. * Remove autogenerated HTML docs since it is including compressed JS r-bioc-mutationalpatterns (2.0.0-2) unstable; urgency=medium . * Team upload. * Add patch to skip tests requiring packages not in Debian (Closes: #961572) r-bioc-mutationalpatterns (2.0.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-mutationalpatterns (1.12.0-2) unstable; urgency=medium . * Trim trailing whitespace. r-bioc-mutationalpatterns (1.12.0-1) unstable; urgency=medium . * Initial release (closes: #955712) r-bioc-netsam (1.38.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-netsam (1.36.0-1) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * New upstream version * dh-update-R to update Build-Depends (routine-update) * Standards-Version: 4.6.1 (routine-update) . [ Nilesh Patra ] * Add r-cran-r2html to B-D * d/rules: Remove fixperms override * Add r-bioc-org.hs.eg.db to test-dep * d/salsa-ci.yml: Disable reprotest r-bioc-netsam (1.34.0-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version * dh-update-R to update Build-Depends (routine-update) . [ Nilesh Patra ] * Add r-cran-r2html to B-D * d/rules: Remove fixperms override * Add r-bioc-org.hs.eg.db to test-dep * d/salsa-ci.yml: Disable reprotest r-bioc-netsam (1.30.0-3) unstable; urgency=medium . * Build with bioc api 3.14 r-bioc-netsam (1.30.0-2) unstable; urgency=medium . * Source-only upload for testing migration. r-bioc-netsam (1.30.0-1) unstable; urgency=medium . * Initial release (closes: #986032) r-bioc-organismdbi (1.40.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-organismdbi (1.38.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-organismdbi (1.38.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-organismdbi (1.36.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Trim trailing whitespace. r-bioc-organismdbi (1.34.0-2) unstable; urgency=medium . * Team upload. * Avoid running tests since homo.sapiens is not packaged r-bioc-organismdbi (1.34.0-1) unstable; urgency=medium . * Initial release (closes: #991825) r-bioc-purecn (2.4.0+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-purecn (2.2.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-purecn (2.0.2+dfsg-2) unstable; urgency=medium . * Add debian/tests/autopkgtest-pkg-r.conf r-bioc-purecn (2.0.2+dfsg-1) unstable; urgency=medium . * New upstream version r-bioc-purecn (2.0.1+dfsg-1) unstable; urgency=medium . * Allow failure for piuparts * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-purecn (1.22.2+dfsg-1) unstable; urgency=medium . * Prepare for proper autopkgtest-pkg-r usage * Fix permissions * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-genomicranges, r-bioc-iranges and r-bioc-variantannotation. r-bioc-purecn (1.20.0+dfsg-3) unstable; urgency=medium . * Deactivate Testsuite: autopkgtest-pkg-r Closes: #981820 r-bioc-purecn (1.20.0+dfsg-2) unstable; urgency=medium . [ Steffen Moeller ] * Smallish lintian quirks I only saw after upload. Sorry. . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Exclude test needing not packaged data set TxDb.Hsapiens.UCSC.hg19.knownGene * Exclude more tests that are failing due to missing data r-bioc-purecn (1.20.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #976789) r-bioc-rgsepd (1.30.0-1) unstable; urgency=medium . * New upstream version r-bioc-rgsepd (1.28.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-rgsepd (1.26.0-1) unstable; urgency=medium . * Team upload. * New upstream version 1.26.0 r-bioc-rgsepd (1.24.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-rgsepd (1.22.0-1) unstable; urgency=medium . * New upstream version r-bioc-rgsepd (1.20.2-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) r-bioc-rgsepd (1.20.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Trim trailing whitespace. r-bioc-rgsepd (1.18.0-2) unstable; urgency=medium . * Add missing copyright entry r-bioc-rgsepd (1.18.0-1) unstable; urgency=medium . * Initial release (closes: #955164) r-bioc-rtracklayer (1.58.0-1) unstable; urgency=medium . * Update link to alioth list * Disable reprotest * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-rtracklayer (1.56.1-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.56.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-rtracklayer (1.54.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-rtracklayer (1.52.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Build-Depends: r-bioc-biocio, r-cran-restfulr * Not testing since non-packaged data is needed r-bioc-rtracklayer (1.50.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * No tab in license text (routine-update) r-bioc-rtracklayer (1.48.0-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rtracklayer (1.46.0-2) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-rtracklayer (1.46.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.4.1 r-bioc-rtracklayer (1.44.4-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.44.3-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor r-bioc-rtracklayer (1.44.2-1) unstable; urgency=medium . * New upstream version * Drop note about no testing in debian/tests/control_ * debhelper-compat 12 r-bioc-rtracklayer (1.44.0-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright r-bioc-rtracklayer (1.42.1-2) unstable; urgency=medium . * Team upload. * dh-update-R: Remove build-dep libgdal-dev and add r-bioc-zlibbioc. * Standards-Version: 4.3.0 r-bioc-rtracklayer (1.42.1-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-rtracklayer (1.42.0-1) unstable; urgency=medium . * Team upload. * New upstream version Closes: #913527 * dh-update-R to update Build-Depends r-bioc-rtracklayer (1.40.6-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 r-bioc-rtracklayer (1.40.5-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.40.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.0 r-bioc-rtracklayer (1.40.3-1) unstable; urgency=medium . * Rebuild for R 3.5 transition * New upstream version * dh-update-R to update Build-Depends r-bioc-rtracklayer (1.40.2-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.40.1-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.40.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-rtracklayer (1.40.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-rtracklayer (1.38.3-1) unstable; urgency=medium . * New upstream version * Preparation of data package moved from SVN to Git * Standards-Version: 4.1.3 * debhelper 11 r-bioc-rtracklayer (1.38.0-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.36.6-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-rtracklayer (1.36.4-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Testsuite: autopkgtest-pkg-r r-bioc-rtracklayer (1.36.4-1) unstable; urgency=medium . * New upstream version Closes: #871333 * Standards-Version: 4.0.1 (no changes needed) * Remove unused lintian override r-bioc-rtracklayer (1.34.1-1) unstable; urgency=medium . * New upstream version Closes: #846937 * debhelper 10 * d/watch: version=4 * Remove unused lintian override * New Build-Depends: pkg-config r-bioc-rtracklayer (1.34.0-2) unstable; urgency=medium . * Rebuild against libssl1.0.2 from unstable r-bioc-rtracklayer (1.34.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-rtracklayer (1.32.2-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.32.1-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.32.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * Add missing Build-Depends: libssl-dev * debian/copyright: Clarify license of files in src/ucsc/* Closes: #807580 r-bioc-rtracklayer (1.30.1-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.28.10-1) unstable; urgency=medium . * New upstream version * Adapt watch file * lintian-overrides for package-contains-timestamped-gzip r-bioc-rtracklayer (1.28.6-1) unstable; urgency=medium . * New upstream version r-bioc-rtracklayer (1.28.5-2) unstable; urgency=medium . * Upload to unstable instead of experimental r-bioc-rtracklayer (1.28.5-1) experimental; urgency=medium . * New upstream version r-bioc-rtracklayer (1.26.0-1) experimental; urgency=medium . * New upstream version + cme fix dpkg-control r-bioc-rtracklayer (1.24.2-1) unstable; urgency=medium . * New upstream version * Moved debian/upstream to debian/upstream/metadata * (Build-)Depends: r-bioc-genomicalignments * Drop autopkgtest that would need 800MB data package r-bioc-bsgenome.hsapiens.ucsc.hg19 to run successfully. Closes: #735543 r-bioc-rtracklayer (1.22.0-1) unstable; urgency=low . * Initial release (closes: #733283). r-bioc-scrnaseq (2.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-scrnaseq (2.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-scrnaseq (2.8.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-scrnaseq (2.6.1+ds-2) unstable; urgency=medium . * extra_depends=r-cran-testthat r-bioc-scrnaseq (2.6.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) r-bioc-scrnaseq (2.4.0+ds-3) unstable; urgency=high . * skip tests that require flaky downloads r-bioc-scrnaseq (2.4.0+ds-2) unstable; urgency=medium . * Source-only upload. * Drop debian/tests/control: it duplicates the pkg-r-autopkgtests r-bioc-scrnaseq (2.4.0+ds-1) unstable; urgency=medium . * Initial release (closes: #982082) r-bioc-structuralvariantannotation (1.13.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-structuralvariantannotation (1.12.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) r-bioc-structuralvariantannotation (1.10.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-structuralvariantannotation (1.10.0+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Allow failure of piuparts * Test-Depends: r-cran-tidyverse r-bioc-structuralvariantannotation (1.8.2+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Trim trailing whitespace. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r * Skip test requiring BSgenome.Hsapiens.UCSC.hg19 r-bioc-structuralvariantannotation (1.6.0+ds-1) unstable; urgency=medium . * Initial release (closes: #983893) r-bioc-tfbstools (1.36.0+dfsg-2) unstable; urgency=medium . * Disable reprotest * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-tfbstools (1.36.0+dfsg-1) unstable; urgency=medium . * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-tfbstools (1.34.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-tfbstools (1.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-tfbstools (1.30.0+dfsg-1) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-biostrings, r-bioc-bsgenome, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rtracklayer, r-bioc-xvector and r-cran-rsqlite. . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-tfbstools (1.28.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-tfbstools (1.26.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tfbstools (1.24.0+dfsg-2) unstable; urgency=medium . * Team upload. * Add patch to fix autopkgtest. * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-tfbstools (1.24.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 r-bioc-tfbstools (1.22.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * rename debian/tests/control.autodep8 to debian/tests/control * Remove test requiring not yet packaged JASPAR2016 r-bioc-tfbstools (1.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-tfbstools (1.18.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #900417) r-bioc-titancna (1.36.0-1) unstable; urgency=medium . * New upstream version r-bioc-titancna (1.34.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-titancna (1.32.0-1) unstable; urgency=medium . * Allow failure of piuparts * New upstream version * dh-update-R to update Build-Depends (routine-update) r-bioc-titancna (1.30.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-biocgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-iranges, r-bioc-variantannotation, r-cran-data.table and r-cran-foreach. r-bioc-titancna (1.28.0-2) unstable; urgency=medium . [ Steffen Möller ] * Add new file - refs to registries . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-titancna (1.28.0-1) unstable; urgency=medium . * Initial release (closes: #975352) r-bioc-tximeta (1.16.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) r-bioc-tximeta (1.14.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Reorder sequence of d/control fields by cme (routine-update) r-bioc-tximeta (1.14.0+dfsg-2) unstable; urgency=medium . * Team upload. * Skip test which needs a non-existing file r-bioc-tximeta (1.14.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 1.14.0+dfsg * Bump Standards-Version to 4.6.1 (no changes needed) r-bioc-tximeta (1.12.4+dfsg-2) unstable; urgency=medium . * Team upload. * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-tximeta (1.12.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximeta (1.12.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-tximeta (1.10.0+dfsg-2) unstable; urgency=medium . * Team upload. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. r-bioc-tximeta (1.10.0+dfsg-1) unstable; urgency=medium . * Initial release (closes: #994680) r-bioc-variantannotation (1.44.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 1.44.0 * Update versioned B-D r-bioc-variantannotation (1.42.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) r-bioc-variantannotation (1.40.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Provide autopkgtest-pkg-r.conf to make sure testthat will be found * Drop debian/tests/control and rely on autopkgtest-pkg-r r-bioc-variantannotation (1.38.0-1) unstable; urgency=medium . [ Andreas Tille ] * Team Upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Remove constraints unnecessary since buster: + Build-Depends: Drop versioned constraint on r-bioc-annotationdbi, r-bioc-biostrings, r-bioc-bsgenome, r-bioc-genomeinfodb, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-summarizedexperiment and r-bioc-xvector. . [ Nilesh Patra ] * d/control: Versioned B-D as per DESCRIPTION file r-bioc-variantannotation (1.36.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * No tab in license text (routine-update) r-bioc-variantannotation (1.34.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-bioc-variantannotation (1.32.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * debian/copyright: Use spaces rather than tabs in continuation lines. * Remove obsolete fields Name, Contact from debian/upstream/metadata. * Build-Depends: libcurl4-openssl-dev | libcurl4-dev r-bioc-variantannotation (1.30.1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.4.0 r-bioc-variantannotation (1.28.10-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-variantannotation (1.28.8-1) unstable; urgency=medium . * New upstream version * debhelper 12 * rename debian/tests/control.autodep8 to debian/tests/control r-bioc-variantannotation (1.28.7-1) unstable; urgency=medium . * Team upload. * New upstream version r-bioc-variantannotation (1.28.5-1) unstable; urgency=medium . * Team upload. * New upstream version. * Drop use_debian_packaged_zlib.patch, r-bioc-zlibbioc is now packaged. * Standards-Version: 4.3.0. r-bioc-variantannotation (1.28.3-1) unstable; urgency=medium . * Team upload. * New upstream version * Add Testsuite: autopkgtest-pkg-r * Add debian/upstream/metadata. r-bioc-variantannotation (1.28.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Remove trailing whitespace in debian/copyright r-bioc-variantannotation (1.28.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.1 r-bioc-variantannotation (1.26.1-1) unstable; urgency=medium . * New upstream version r-bioc-variantannotation (1.26.0-3) unstable; urgency=medium . * Rebuild for R 3.5 transition * dh-update-R to update Build-Depends r-bioc-variantannotation (1.26.0-2) unstable; urgency=medium . * Fix Maintainer and Vcs-fields r-bioc-variantannotation (1.26.0-1) unstable; urgency=medium . * New upstream version Closes: #897540 * dh-update-R to update Build-Depends * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 r-bioc-variantannotation (1.24.5-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.1.3 * debhelper 11 r-bioc-variantannotation (1.24.2-1) unstable; urgency=medium . * New upstream version Closes: #882362 * install run-unit-test script in /usr/share/doc/r-bioc-variantannotation r-bioc-variantannotation (1.24.1-1) unstable; urgency=medium . * New upstream version * Secure URI in watch file r-bioc-variantannotation (1.22.3-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 r-bioc-variantannotation (1.22.1-1) unstable; urgency=medium . * Team upload * New upstream version * Update Build-Depends: r-bioc-genomicfeatures (>= 1.27.4), r-bioc-summarizedexperiment (>= 1.5.3), r-bioc-rsamtools (>= 1.28.0) * Refresh debian/patches/use_debian_packaged_zlib.patch r-bioc-variantannotation (1.20.2-1) unstable; urgency=medium . * New upstream version r-bioc-variantannotation (1.20.1-1) unstable; urgency=medium . * New upstream version * debhelper 10 * d/watch: version=4 r-bioc-variantannotation (1.20.0-1) unstable; urgency=medium . * New upstream version * Convert to dh-r * Generic BioConductor homepage r-bioc-variantannotation (1.18.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control r-bioc-variantannotation (1.16.3-1) unstable; urgency=medium . * New upstream version Closes: #804223 r-bioc-variantannotation (1.14.13-1) unstable; urgency=medium . * New upstream version * Fixed watch file r-bioc-variantannotation (1.14.6-1) unstable; urgency=medium . * New upstream version r-bioc-variantannotation (1.14.4-1) unstable; urgency=medium . * New upstream version r-bioc-variantannotation (1.12.0-1) experimental; urgency=medium . * New upstream version * cme fix dpkg-control * Adapted dependencies r-bioc-variantannotation (1.10.5-1) unstable; urgency=medium . * New upstream version r-bioc-variantannotation (1.10.1-1) unstable; urgency=medium . * Initial release (closes: #755884) r-cran-ggm (2.5-2) unstable; urgency=medium . * Rules-Requires-Root: no (routine-update) r-cran-ggm (2.5-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends r-cran-ggm (2.3-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 * Trim trailing whitespace. r-cran-ggm (2.3-1) unstable; urgency=medium . * Initial release (closes: #940598) r-cran-metap (1.8-1) unstable; urgency=medium . * Team upload. * New upstream version r-cran-metap (1.7-1) unstable; urgency=medium . * Team upload. * New upstream version r-cran-metap (1.6-1) unstable; urgency=medium . * Team upload. * New upstream version 1.6 r-cran-metap (1.5-1) unstable; urgency=medium . * Team upload. * Disable reprotest * Standards-Version: 4.6.0 (routine-update) r-cran-metap (1.4-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 13 (routine-update) * Build-Depends: r-cran-mathjaxr r-cran-metap (1.3-2) unstable; urgency=medium . * Team upload. * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-cran-metap (1.3-1) unstable; urgency=medium . [ Dylan Aïssi ] * Team upload. * New upstream version * Trim trailing whitespace. . [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Archive. * Build-Depends: r-cran-tfisher, r-cran-mutoss r-cran-metap (1.1-1) unstable; urgency=medium . * Initial release (closes: #934651) r-cran-multidimbio (1.2.2-2) unstable; urgency=medium . * Source upload in R 4.0 transition r-cran-multidimbio (1.2.2-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-cran-multidimbio (1.2.1-1) unstable; urgency=medium . * New upstream version r-cran-multidimbio (1.2.0-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends * Trim trailing whitespace. * Set upstream metadata fields: Archive. r-cran-multidimbio (1.1.1-1) unstable; urgency=medium . * Initial release (closes: #933244) r-cran-mutoss (0.1-12-3) unstable; urgency=medium . * ftpmaster comment: Package is rather GPL-1+ * Rules-Requires-Root: no (routine-update) r-cran-mutoss (0.1-12-2) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Archive, Bug-Database, Bug-Submit, Repository, Repository-Browse. r-cran-mutoss (0.1-12-1) unstable; urgency=medium . * Initial release (closes: #948267) r-cran-pscbs (0.66.0-2) unstable; urgency=medium . * Team upload. * [skip ci] Attempt ignoring one test on armhf * d/salsa-ci.yml: Disable reprotest * d/t/run-unit-test: Capture exit code properly, and exit with it if there is some problem, after printing Rout file r-cran-pscbs (0.66.0-1) unstable; urgency=medium . * Team Upload. [ Debian Janitor ] * Bump debhelper from old 12 to 13. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. . [ Nilesh Patra ] * New upstream version 0.66.0 * Run dh-update-R, cme r-cran-pscbs (0.65.0-3) unstable; urgency=medium . * Team upload. r-cran-pscbs (0.65.0-2) unstable; urgency=medium . * Team upload. * Switch d/watch to scan CRAN and not github. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) r-cran-pscbs (0.65.0-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper 12 * Standards-Version: 4.4.0 r-cran-pscbs (0.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.2.0 r-cran-pscbs (0.63.0-2) unstable; urgency=medium . * Team upload. * debhelper 11 * Maintainer: Debian R Packages Maintainers * Point Vcs fields to salsa.debian.org * dh-update-R to update Build-Depends * Architecture: all (instead of any) r-cran-pscbs (0.63.0-1) unstable; urgency=medium . * Team upload * New upstream version * debhelper 10 * Standards-Version: 4.1.1 * New Build-Depends: r-bioc-aroma.light r-cran-pscbs (0.62.0-1) unstable; urgency=medium . * Team upload * New upstream version * Convert to dh-r * cme fix dpkg-control * Canonical homepage for CRAN * update d/copyright * d/watch: version=4 r-cran-pscbs (0.61.0-2) unstable; urgency=medium . * Team upload * Fix test dependencies (thanks to Gordon Ball) r-cran-pscbs (0.61.0-1) unstable; urgency=medium . * Initial release. (Closes: #828690) r-cran-restfulr (0.0.15-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * dh-update-R to update Build-Depends (routine-update) r-cran-restfulr (0.0.13-2) unstable; urgency=medium . * Packaging update * Standards-Version: 4.6.0 (routine-update) * dh-update-R to update Build-Depends (3) (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Archive. r-cran-restfulr (0.0.13-1) unstable; urgency=medium . * Initial release (closes: #993812) r-cran-samr (3.0-2) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Archive. r-cran-samr (3.0-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.2.1 * dh-update-R to update Build-Depends * Fix permissions r-cran-samr (2.0-2) unstable; urgency=medium . * Maintainer: Debian R Packages Maintainers * dh-update-R to update Build-Depends r-cran-samr (2.0-1) unstable; urgency=medium . * Initial release (closes: #892498) r-cran-spp (1.16.0-2) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Archive. r-cran-spp (1.16.0-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 . [ Dylan Aïssi ] * Standards-Version: 4.4.0 r-cran-spp (1.15.5-1) unstable; urgency=medium . * Team upload. * New upstream version * Rename package to r-cran-spp, because now on CRAN (Closes: #910351). r-cran-wgcna (1.71-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) r-cran-wgcna (1.70-3-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) r-cran-wgcna (1.69-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) r-cran-wgcna (1.68-2) unstable; urgency=medium . * Team upload. * dh-update-R to update Build-Depends * Set upstream metadata fields: Archive. * Add (Build-)Depends: r-cran-fit.models, r-cran-rrcov manually since it is missing in DESCRIPTION file r-cran-wgcna (1.68-1) unstable; urgency=medium . * New upstream version, first upload (closes: #939972). * Now vailable from CRAN - renamed yet unreleased package accordingly r-other-wasabi (1.0.1-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. r-other-wasabi (1.0.1-1) unstable; urgency=medium . * New upstream version r-other-wasabi (1.0.0-1) unstable; urgency=medium . * Initial release (closes: #928763)